Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 217 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9r:AB (3.0) BS01 rna ? GO:0003735 ... P80371 24412368
    2 4v9r:AC (3.0) BS01 rna ? GO:0003676 ... P80372 24412368
    3 4v9r:AD (3.0) BS01 rna ? GO:0003723 ... P80373 24412368
    4 4v9r:AD (3.0) BS02 SF4 ? GO:0003723 ... P80373 24412368
    5 4v9r:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 24412368
    6 4v9r:AE (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 24412368
    7 4v9r:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 24412368
    8 4v9r:AG (3.0) BS01 rna ? GO:0000028 ... P17291 24412368
    9 4v9r:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    10 4v9r:AI (3.0) BS01 rna ? GO:0000049 ... P80374 24412368
    11 4v9r:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 24412368
    12 4v9r:AK (3.0) BS01 rna ? GO:0003735 ... P80376 24412368
    13 4v9r:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 24412368
    14 4v9r:AL (3.0) BS02 peptide ? GO:0000049 ... Q5SHN3 24412368
    15 4v9r:AL (3.0) BS03 MG ? GO:0000049 ... Q5SHN3 24412368
    16 4v9r:AM (3.0) BS01 rna ? GO:0000049 ... P80377 24412368
    17 4v9r:AM (3.0) BS02 rna ? GO:0000049 ... P80377 24412368
    18 4v9r:AM (3.0) BS03 MG ? GO:0000049 ... P80377 24412368
    19 4v9r:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    20 4v9r:AN (3.0) BS02 MG N/A GO:0003735 ... N/A 24412368
    21 4v9r:AN (3.0) BS03 ZN N/A GO:0003735 ... N/A 24412368
    22 4v9r:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 24412368
    23 4v9r:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 24412368
    24 4v9r:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 24412368
    25 4v9r:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    26 4v9r:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 24412368
    27 4v9r:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 24412368
    28 4v9r:AT (3.0) BS01 rna ? GO:0003723 ... P80380 24412368
    29 4v9r:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 24412368
    30 4v9r:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 24412368
    31 4v9r:B0 (3.0) BS03 MG ? GO:0003735 ... P60493 24412368
    32 4v9r:B0 (3.0) BS04 MG ? GO:0003735 ... P60493 24412368
    33 4v9r:B0 (3.0) BS05 MG ? GO:0003735 ... P60493 24412368
    34 4v9r:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 24412368
    35 4v9r:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 24412368
    36 4v9r:B2 (3.0) BS02 MG ? GO:0003735 ... Q5SHP6 24412368
    37 4v9r:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 24412368
    38 4v9r:B3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 24412368
    39 4v9r:B3 (3.0) BS03 MG ? GO:0003735 ... Q5SHQ6 24412368
    40 4v9r:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 24412368
    41 4v9r:B4 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 24412368
    42 4v9r:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 24412368
    43 4v9r:B5 (3.0) BS02 ZN ? GO:0003735 ... P80339 24412368
    44 4v9r:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 24412368
    45 4v9r:B6 (3.0) BS02 ZN ? GO:0000049 ... P35871 24412368
    46 4v9r:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 24412368
    47 4v9r:B7 (3.0) BS02 MG ? GO:0003735 ... P80340 24412368
    48 4v9r:B7 (3.0) BS03 MG ? GO:0003735 ... P80340 24412368
    49 4v9r:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 24412368
    50 4v9r:B8 (3.0) BS02 MG ? GO:0003735 ... Q5SKU1 24412368
    51 4v9r:B9 (3.0) BS01 rna ? GO:0003735 ... P80256 24412368
    52 4v9r:B9 (3.0) BS02 ZN ? GO:0003735 ... P80256 24412368
    53 4v9r:BD (3.0) BS01 rna ? GO:0002181 ... P60405 24412368
    54 4v9r:BD (3.0) BS02 MG ? GO:0002181 ... P60405 24412368
    55 4v9r:BD (3.0) BS03 MG ? GO:0002181 ... P60405 24412368
    56 4v9r:BD (3.0) BS04 MG ? GO:0002181 ... P60405 24412368
    57 4v9r:BD (3.0) BS05 MG ? GO:0002181 ... P60405 24412368
    58 4v9r:BD (3.0) BS06 MG ? GO:0002181 ... P60405 24412368
    59 4v9r:BD (3.0) BS07 MG ? GO:0002181 ... P60405 24412368
    60 4v9r:BD (3.0) BS08 MG ? GO:0002181 ... P60405 24412368
    61 4v9r:BD (3.0) BS09 MG ? GO:0002181 ... P60405 24412368
    62 4v9r:BD (3.0) BS10 MG ? GO:0002181 ... P60405 24412368
    63 4v9r:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 24412368
    64 4v9r:BE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 24412368
    65 4v9r:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 24412368
    66 4v9r:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 24412368
    67 4v9r:BF (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 24412368
    68 4v9r:BF (3.0) BS04 MG ? GO:0003735 ... Q5SHN9 24412368
    69 4v9r:BF (3.0) BS05 MG ? GO:0003735 ... Q5SHN9 24412368
    70 4v9r:BF (3.0) BS06 MG ? GO:0003735 ... Q5SHN9 24412368
    71 4v9r:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 24412368
    72 4v9r:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 24412368
    73 4v9r:BG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 24412368
    74 4v9r:BG (3.0) BS04 MG ? GO:0000049 ... Q5SHQ0 24412368
    75 4v9r:BG (3.0) BS05 MG ? GO:0000049 ... Q5SHQ0 24412368
    76 4v9r:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    77 4v9r:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 24412368
    78 4v9r:BN (3.0) BS01 rna ? GO:0003729 ... P60488 24412368
    79 4v9r:BN (3.0) BS02 MG ? GO:0003729 ... P60488 24412368
    80 4v9r:BN (3.0) BS03 MG ? GO:0003729 ... P60488 24412368
    81 4v9r:BN (3.0) BS04 MG ? GO:0003729 ... P60488 24412368
    82 4v9r:BN (3.0) BS05 MG ? GO:0003729 ... P60488 24412368
    83 4v9r:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 24412368
    84 4v9r:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 24412368
    85 4v9r:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 24412368
    86 4v9r:BP (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 24412368
    87 4v9r:BP (3.0) BS03 MG ? GO:0003735 ... Q5SHQ7 24412368
    88 4v9r:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 24412368
    89 4v9r:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 24412368
    90 4v9r:BQ (3.0) BS03 MG ? GO:0000049 ... P60489 24412368
    91 4v9r:BQ (3.0) BS04 MG ? GO:0000049 ... P60489 24412368
    92 4v9r:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 24412368
    93 4v9r:BR (3.0) BS02 MG ? GO:0003735 ... Q9Z9H5 24412368
    94 4v9r:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 24412368
    95 4v9r:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 24412368
    96 4v9r:BT (3.0) BS01 rna ? GO:0003735 ... P60490 24412368
    97 4v9r:BT (3.0) BS02 rna ? GO:0003735 ... P60490 24412368
    98 4v9r:BU (3.0) BS01 rna ? GO:0000027 ... P60491 24412368
    99 4v9r:BU (3.0) BS02 MG ? GO:0000027 ... P60491 24412368
    100 4v9r:BU (3.0) BS03 MG ? GO:0000027 ... P60491 24412368
    101 4v9r:BU (3.0) BS04 MG ? GO:0000027 ... P60491 24412368
    102 4v9r:BU (3.0) BS05 MG ? GO:0000027 ... P60491 24412368
    103 4v9r:BU (3.0) BS06 MG ? GO:0000027 ... P60491 24412368
    104 4v9r:BV (3.0) BS01 rna ? GO:0003723 ... P60492 24412368
    105 4v9r:BV (3.0) BS02 MG ? GO:0003723 ... P60492 24412368
    106 4v9r:BV (3.0) BS03 MG ? GO:0003723 ... P60492 24412368
    107 4v9r:BV (3.0) BS04 MG ? GO:0003723 ... P60492 24412368
    108 4v9r:BV (3.0) BS05 MG ? GO:0003723 ... P60492 24412368
    109 4v9r:BV (3.0) BS06 MG ? GO:0003723 ... P60492 24412368
    110 4v9r:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 24412368
    111 4v9r:BW (3.0) BS02 MG ? GO:0003735 ... Q5SHP3 24412368
    112 4v9r:BW (3.0) BS03 MG ? GO:0003735 ... Q5SHP3 24412368
    113 4v9r:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 24412368
    114 4v9r:BX (3.0) BS02 MG ? GO:0000027 ... Q5SHP0 24412368
    115 4v9r:BY (3.0) BS01 rna ? GO:0003723 ... Q56435 24412368
    116 4v9r:BY (3.0) BS02 ZN ? GO:0003723 ... Q56435 24412368
    117 4v9r:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 24412368
    118 4v9r:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 24412368
    119 4v9r:CB (3.0) BS01 rna ? GO:0003735 ... P80371 24412368
    120 4v9r:CC (3.0) BS01 rna ? GO:0003676 ... P80372 24412368
    121 4v9r:CD (3.0) BS01 rna ? GO:0003723 ... P80373 24412368
    122 4v9r:CD (3.0) BS02 SF4 ? GO:0003723 ... P80373 24412368
    123 4v9r:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 24412368
    124 4v9r:CE (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 24412368
    125 4v9r:CE (3.0) BS03 MG ? GO:0003723 ... Q5SHQ5 24412368
    126 4v9r:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 24412368
    127 4v9r:CF (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 24412368
    128 4v9r:CG (3.0) BS01 rna ? GO:0000028 ... P17291 24412368
    129 4v9r:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    130 4v9r:CI (3.0) BS01 rna ? GO:0000049 ... P80374 24412368
    131 4v9r:CI (3.0) BS02 rna ? GO:0000049 ... P80374 24412368
    132 4v9r:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 24412368
    133 4v9r:CK (3.0) BS01 rna ? GO:0003735 ... P80376 24412368
    134 4v9r:CK (3.0) BS02 MG ? GO:0003735 ... P80376 24412368
    135 4v9r:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 24412368
    136 4v9r:CL (3.0) BS02 peptide ? GO:0000049 ... Q5SHN3 24412368
    137 4v9r:CM (3.0) BS01 rna ? GO:0000049 ... P80377 24412368
    138 4v9r:CM (3.0) BS02 rna ? GO:0000049 ... P80377 24412368
    139 4v9r:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    140 4v9r:CN (3.0) BS02 ZN N/A GO:0003735 ... N/A 24412368
    141 4v9r:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 24412368
    142 4v9r:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 24412368
    143 4v9r:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 24412368
    144 4v9r:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    145 4v9r:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 24412368
    146 4v9r:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 24412368
    147 4v9r:CT (3.0) BS01 rna ? GO:0003723 ... P80380 24412368
    148 4v9r:CT (3.0) BS02 MG ? GO:0003723 ... P80380 24412368
    149 4v9r:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 24412368
    150 4v9r:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 24412368
    151 4v9r:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 24412368
    152 4v9r:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 24412368
    153 4v9r:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 24412368
    154 4v9r:D3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 24412368
    155 4v9r:D3 (3.0) BS03 MG ? GO:0003735 ... Q5SHQ6 24412368
    156 4v9r:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 24412368
    157 4v9r:D4 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 24412368
    158 4v9r:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 24412368
    159 4v9r:D5 (3.0) BS02 ZN ? GO:0003735 ... P80339 24412368
    160 4v9r:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 24412368
    161 4v9r:D6 (3.0) BS02 ZN ? GO:0000049 ... P35871 24412368
    162 4v9r:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 24412368
    163 4v9r:D7 (3.0) BS02 MG ? GO:0003735 ... P80340 24412368
    164 4v9r:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 24412368
    165 4v9r:D9 (3.0) BS01 rna ? GO:0003735 ... P80256 24412368
    166 4v9r:D9 (3.0) BS02 ZN ? GO:0003735 ... P80256 24412368
    167 4v9r:DD (3.0) BS01 rna ? GO:0002181 ... P60405 24412368
    168 4v9r:DD (3.0) BS02 rna ? GO:0002181 ... P60405 24412368
    169 4v9r:DD (3.0) BS03 MG ? GO:0002181 ... P60405 24412368
    170 4v9r:DD (3.0) BS04 MG ? GO:0002181 ... P60405 24412368
    171 4v9r:DD (3.0) BS05 MG ? GO:0002181 ... P60405 24412368
    172 4v9r:DD (3.0) BS06 MG ? GO:0002181 ... P60405 24412368
    173 4v9r:DD (3.0) BS07 MG ? GO:0002181 ... P60405 24412368
    174 4v9r:DD (3.0) BS08 MG ? GO:0002181 ... P60405 24412368
    175 4v9r:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 24412368
    176 4v9r:DE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 24412368
    177 4v9r:DE (3.0) BS03 MG ? GO:0003735 ... Q5SHN8 24412368
    178 4v9r:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 24412368
    179 4v9r:DF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 24412368
    180 4v9r:DF (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 24412368
    181 4v9r:DF (3.0) BS04 MG ? GO:0003735 ... Q5SHN9 24412368
    182 4v9r:DF (3.0) BS05 MG ? GO:0003735 ... Q5SHN9 24412368
    183 4v9r:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 24412368
    184 4v9r:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 24412368
    185 4v9r:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 24412368
    186 4v9r:DG (3.0) BS04 MG ? GO:0000049 ... Q5SHQ0 24412368
    187 4v9r:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    188 4v9r:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 24412368
    189 4v9r:DN (3.0) BS01 rna ? GO:0003729 ... P60488 24412368
    190 4v9r:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 24412368
    191 4v9r:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 24412368
    192 4v9r:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 24412368
    193 4v9r:DP (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 24412368
    194 4v9r:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 24412368
    195 4v9r:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 24412368
    196 4v9r:DQ (3.0) BS03 MG ? GO:0000049 ... P60489 24412368
    197 4v9r:DQ (3.0) BS04 MG ? GO:0000049 ... P60489 24412368
    198 4v9r:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 24412368
    199 4v9r:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 24412368
    200 4v9r:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 24412368
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218