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BioLiP
Download all results in tab-seperated text for 128 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9a:AE (3.2999) BS01 rna ? GO:0003735 ... P80371 23431179
    2 4v9a:AF (3.2999) BS01 rna ? GO:0003676 ... P80372 23431179
    3 4v9a:AG (3.2999) BS01 rna ? GO:0003723 ... P80373 23431179
    4 4v9a:AG (3.2999) BS02 ZN ? GO:0003723 ... P80373 23431179
    5 4v9a:AH (3.2999) BS01 rna ? GO:0003723 ... Q5SHQ5 23431179
    6 4v9a:AI (3.2999) BS01 rna ? GO:0003735 ... Q5SLP8 23431179
    7 4v9a:AJ (3.2999) BS01 rna ? GO:0000028 ... P17291 23431179
    8 4v9a:AK (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    9 4v9a:AL (3.2999) BS01 rna ? GO:0000049 ... P80374 23431179
    10 4v9a:AL (3.2999) BS02 rna ? GO:0000049 ... P80374 23431179
    11 4v9a:AM (3.2999) BS01 rna ? GO:0000049 ... Q5SHN7 23431179
    12 4v9a:AN (3.2999) BS01 rna ? GO:0003735 ... P80376 23431179
    13 4v9a:AO (3.2999) BS01 rna ? GO:0000049 ... Q5SHN3 23431179
    14 4v9a:AP (3.2999) BS01 rna ? GO:0000049 ... P80377 23431179
    15 4v9a:AQ (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    16 4v9a:AQ (3.2999) BS02 ZN N/A GO:0003735 ... N/A 23431179
    17 4v9a:AR (3.2999) BS01 rna ? GO:0003735 ... Q5SJ76 23431179
    18 4v9a:AR (3.2999) BS02 rna ? GO:0003735 ... Q5SJ76 23431179
    19 4v9a:AS (3.2999) BS01 rna ? GO:0003735 ... Q5SJH3 23431179
    20 4v9a:AT (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    21 4v9a:AU (3.2999) BS01 rna ? GO:0003735 ... Q5SLQ0 23431179
    22 4v9a:AV (3.2999) BS01 rna ? GO:0000028 ... Q5SHP2 23431179
    23 4v9a:AW (3.2999) BS01 rna ? GO:0003723 ... P80380 23431179
    24 4v9a:B0 (3.2999) BS01 rna ? GO:0003735 ... Q9Z9H5 23431179
    25 4v9a:B1 (3.2999) BS01 rna ? GO:0000027 ... P60491 23431179
    26 4v9a:B2 (3.2999) BS01 rna ? GO:0003723 ... P60492 23431179
    27 4v9a:B3 (3.2999) BS01 rna ? GO:0003735 ... P60493 23431179
    28 4v9a:B3 (3.2999) BS02 rna ? GO:0003735 ... P60493 23431179
    29 4v9a:B4 (3.2999) BS01 rna ? GO:0003735 ... Q5SJE1 23431179
    30 4v9a:B4 (3.2999) BS02 rna ? GO:0003735 ... Q5SJE1 23431179
    31 4v9a:B5 (3.2999) BS01 rna ? GO:0003735 ... P80339 23431179
    32 4v9a:B6 (3.2999) BS01 rna ? GO:0000049 ... P35871 23431179
    33 4v9a:B7 (3.2999) BS01 rna ? GO:0003735 ... P80340 23431179
    34 4v9a:B8 (3.2999) BS01 rna ? GO:0003735 ... Q5SKU1 23431179
    35 4v9a:BD (3.2999) BS01 rna ? GO:0002181 ... P60405 23431179
    36 4v9a:BD (3.2999) BS02 MG ? GO:0002181 ... P60405 23431179
    37 4v9a:BE (3.2999) BS01 rna ? GO:0003735 ... Q5SHN8 23431179
    38 4v9a:BE (3.2999) BS02 MG ? GO:0003735 ... Q5SHN8 23431179
    39 4v9a:BF (3.2999) BS01 rna ? GO:0003735 ... Q5SHN9 23431179
    40 4v9a:BF (3.2999) BS02 MG ? GO:0003735 ... Q5SHN9 23431179
    41 4v9a:BF (3.2999) BS03 MG ? GO:0003735 ... Q5SHN9 23431179
    42 4v9a:BG (3.2999) BS01 rna ? GO:0000049 ... Q5SHQ0 23431179
    43 4v9a:BG (3.2999) BS02 rna ? GO:0000049 ... Q5SHQ0 23431179
    44 4v9a:BG (3.2999) BS03 rna ? GO:0000049 ... Q5SHQ0 23431179
    45 4v9a:BH (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    46 4v9a:BK (3.2999) BS01 rna ? GO:0003735 ... Q5SLQ1 23431179
    47 4v9a:BM (3.2999) BS01 rna ? GO:0003729 ... P60488 23431179
    48 4v9a:BN (3.2999) BS01 rna ? GO:0003735 ... Q5SHP8 23431179
    49 4v9a:BN (3.2999) BS02 rna ? GO:0003735 ... Q5SHP8 23431179
    50 4v9a:BO (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ7 23431179
    51 4v9a:BP (3.2999) BS01 rna ? GO:0000049 ... P60489 23431179
    52 4v9a:BP (3.2999) BS02 rna ? GO:0000049 ... P60489 23431179
    53 4v9a:BQ (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ4 23431179
    54 4v9a:BQ (3.2999) BS02 rna ? GO:0003735 ... Q5SHQ4 23431179
    55 4v9a:BR (3.2999) BS01 rna ? GO:0003735 ... P60490 23431179
    56 4v9a:BR (3.2999) BS02 rna ? GO:0003735 ... P60490 23431179
    57 4v9a:BS (3.2999) BS01 rna ? GO:0003735 ... Q5SHP3 23431179
    58 4v9a:BT (3.2999) BS01 rna ? GO:0000027 ... Q5SHP0 23431179
    59 4v9a:BU (3.2999) BS01 rna ? GO:0003723 ... Q5SHP9 23431179
    60 4v9a:BV (3.2999) BS01 rna ? GO:0003723 ... Q5SHZ1 23431179
    61 4v9a:BV (3.2999) BS02 rna ? GO:0003723 ... Q5SHZ1 23431179
    62 4v9a:BW (3.2999) BS01 rna ? GO:0003735 ... Q5SHP6 23431179
    63 4v9a:BX (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ6 23431179
    64 4v9a:BX (3.2999) BS02 rna ? GO:0003735 ... Q5SHQ6 23431179
    65 4v9a:BZ (3.2999) BS01 rna ? GO:0003735 ... P60494 23431179
    66 4v9a:CE (3.2999) BS01 rna ? GO:0003735 ... P80371 23431179
    67 4v9a:CF (3.2999) BS01 rna ? GO:0003676 ... P80372 23431179
    68 4v9a:CG (3.2999) BS01 rna ? GO:0003723 ... P80373 23431179
    69 4v9a:CG (3.2999) BS02 MG ? GO:0003723 ... P80373 23431179
    70 4v9a:CG (3.2999) BS03 ZN ? GO:0003723 ... P80373 23431179
    71 4v9a:CH (3.2999) BS01 rna ? GO:0003723 ... Q5SHQ5 23431179
    72 4v9a:CI (3.2999) BS01 rna ? GO:0003735 ... Q5SLP8 23431179
    73 4v9a:CJ (3.2999) BS01 rna ? GO:0000028 ... P17291 23431179
    74 4v9a:CK (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    75 4v9a:CL (3.2999) BS01 rna ? GO:0000049 ... P80374 23431179
    76 4v9a:CL (3.2999) BS02 rna ? GO:0000049 ... P80374 23431179
    77 4v9a:CM (3.2999) BS01 rna ? GO:0000049 ... Q5SHN7 23431179
    78 4v9a:CN (3.2999) BS01 rna ? GO:0003735 ... P80376 23431179
    79 4v9a:CN (3.2999) BS02 MG ? GO:0003735 ... P80376 23431179
    80 4v9a:CO (3.2999) BS01 rna ? GO:0000049 ... Q5SHN3 23431179
    81 4v9a:CP (3.2999) BS01 rna ? GO:0000049 ... P80377 23431179
    82 4v9a:CQ (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    83 4v9a:CQ (3.2999) BS02 ZN N/A GO:0003735 ... N/A 23431179
    84 4v9a:CR (3.2999) BS01 rna ? GO:0003735 ... Q5SJ76 23431179
    85 4v9a:CR (3.2999) BS02 rna ? GO:0003735 ... Q5SJ76 23431179
    86 4v9a:CS (3.2999) BS01 rna ? GO:0003735 ... Q5SJH3 23431179
    87 4v9a:CT (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    88 4v9a:CU (3.2999) BS01 rna ? GO:0003735 ... Q5SLQ0 23431179
    89 4v9a:CV (3.2999) BS01 rna ? GO:0000028 ... Q5SHP2 23431179
    90 4v9a:CW (3.2999) BS01 rna ? GO:0003723 ... P80380 23431179
    91 4v9a:D0 (3.2999) BS01 rna ? GO:0003735 ... Q9Z9H5 23431179
    92 4v9a:D1 (3.2999) BS01 rna ? GO:0000027 ... P60491 23431179
    93 4v9a:D2 (3.2999) BS01 rna ? GO:0003723 ... P60492 23431179
    94 4v9a:D3 (3.2999) BS01 rna ? GO:0003735 ... P60493 23431179
    95 4v9a:D4 (3.2999) BS01 rna ? GO:0003735 ... Q5SJE1 23431179
    96 4v9a:D5 (3.2999) BS01 rna ? GO:0003735 ... P80339 23431179
    97 4v9a:D6 (3.2999) BS01 rna ? GO:0000049 ... P35871 23431179
    98 4v9a:D7 (3.2999) BS01 rna ? GO:0003735 ... P80340 23431179
    99 4v9a:D8 (3.2999) BS01 rna ? GO:0003735 ... Q5SKU1 23431179
    100 4v9a:DD (3.2999) BS01 rna ? GO:0002181 ... P60405 23431179
    101 4v9a:DD (3.2999) BS02 rna ? GO:0002181 ... P60405 23431179
    102 4v9a:DE (3.2999) BS01 rna ? GO:0003735 ... Q5SHN8 23431179
    103 4v9a:DF (3.2999) BS01 rna ? GO:0003735 ... Q5SHN9 23431179
    104 4v9a:DG (3.2999) BS01 rna ? GO:0000049 ... Q5SHQ0 23431179
    105 4v9a:DG (3.2999) BS02 rna ? GO:0000049 ... Q5SHQ0 23431179
    106 4v9a:DG (3.2999) BS03 rna ? GO:0000049 ... Q5SHQ0 23431179
    107 4v9a:DH (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    108 4v9a:DK (3.2999) BS01 rna ? GO:0003735 ... Q5SLQ1 23431179
    109 4v9a:DK (3.2999) BS02 rna ? GO:0003735 ... Q5SLQ1 23431179
    110 4v9a:DM (3.2999) BS01 rna ? GO:0003729 ... P60488 23431179
    111 4v9a:DN (3.2999) BS01 rna ? GO:0003735 ... Q5SHP8 23431179
    112 4v9a:DN (3.2999) BS02 rna ? GO:0003735 ... Q5SHP8 23431179
    113 4v9a:DO (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ7 23431179
    114 4v9a:DP (3.2999) BS01 rna ? GO:0000049 ... P60489 23431179
    115 4v9a:DP (3.2999) BS02 rna ? GO:0000049 ... P60489 23431179
    116 4v9a:DQ (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ4 23431179
    117 4v9a:DQ (3.2999) BS02 rna ? GO:0003735 ... Q5SHQ4 23431179
    118 4v9a:DR (3.2999) BS01 rna ? GO:0003735 ... P60490 23431179
    119 4v9a:DR (3.2999) BS02 rna ? GO:0003735 ... P60490 23431179
    120 4v9a:DS (3.2999) BS01 rna ? GO:0003735 ... Q5SHP3 23431179
    121 4v9a:DT (3.2999) BS01 rna ? GO:0000027 ... Q5SHP0 23431179
    122 4v9a:DU (3.2999) BS01 rna ? GO:0003723 ... Q5SHP9 23431179
    123 4v9a:DV (3.2999) BS01 rna ? GO:0003723 ... Q5SHZ1 23431179
    124 4v9a:DV (3.2999) BS02 rna ? GO:0003723 ... Q5SHZ1 23431179
    125 4v9a:DW (3.2999) BS01 rna ? GO:0003735 ... Q5SHP6 23431179
    126 4v9a:DX (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ6 23431179
    127 4v9a:DX (3.2999) BS02 rna ? GO:0003735 ... Q5SHQ6 23431179
    128 4v9a:DZ (3.2999) BS01 rna ? GO:0003735 ... P60494 23431179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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