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BioLiP
Download all results in tab-seperated text for 145 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v97:AB (3.516) BS01 rna ? GO:0003735 ... P80371 23630274
    2 4v97:AC (3.516) BS01 rna ? GO:0003676 ... P80372 23630274
    3 4v97:AD (3.516) BS01 rna ? GO:0003723 ... P80373 23630274
    4 4v97:AD (3.516) BS02 ZN ? GO:0003723 ... P80373 23630274
    5 4v97:AE (3.516) BS01 rna ? GO:0003723 ... Q5SHQ5 23630274
    6 4v97:AF (3.516) BS01 rna ? GO:0003735 ... Q5SLP8 23630274
    7 4v97:AG (3.516) BS01 rna ? GO:0000028 ... P17291 23630274
    8 4v97:AG (3.516) BS02 rna ? GO:0000028 ... P17291 23630274
    9 4v97:AG (3.516) BS03 rna ? GO:0000028 ... P17291 23630274
    10 4v97:AH (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    11 4v97:AI (3.516) BS01 rna ? GO:0000049 ... P80374 23630274
    12 4v97:AJ (3.516) BS01 rna ? GO:0000049 ... Q5SHN7 23630274
    13 4v97:AJ (3.516) BS02 rna ? GO:0000049 ... Q5SHN7 23630274
    14 4v97:AK (3.516) BS01 rna ? GO:0003735 ... P80376 23630274
    15 4v97:AL (3.516) BS01 rna ? GO:0000049 ... Q5SHN3 23630274
    16 4v97:AM (3.516) BS01 rna ? GO:0000049 ... P80377 23630274
    17 4v97:AM (3.516) BS02 rna ? GO:0000049 ... P80377 23630274
    18 4v97:AM (3.516) BS03 rna ? GO:0000049 ... P80377 23630274
    19 4v97:AN (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    20 4v97:AN (3.516) BS02 ZN N/A GO:0003735 ... N/A 23630274
    21 4v97:AO (3.516) BS01 rna ? GO:0003735 ... Q5SJ76 23630274
    22 4v97:AO (3.516) BS02 rna ? GO:0003735 ... Q5SJ76 23630274
    23 4v97:AP (3.516) BS01 rna ? GO:0003735 ... Q5SJH3 23630274
    24 4v97:AQ (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    25 4v97:AR (3.516) BS01 rna ? GO:0003735 ... Q5SLQ0 23630274
    26 4v97:AS (3.516) BS01 rna ? GO:0000028 ... Q5SHP2 23630274
    27 4v97:AT (3.516) BS01 rna ? GO:0003723 ... P80380 23630274
    28 4v97:B0 (3.516) BS01 rna ? GO:0003735 ... P60493 23630274
    29 4v97:B0 (3.516) BS02 rna ? GO:0003735 ... P60493 23630274
    30 4v97:B0 (3.516) BS03 rna ? GO:0003735 ... P60493 23630274
    31 4v97:B1 (3.516) BS01 rna ? GO:0003735 ... P60494 23630274
    32 4v97:B2 (3.516) BS01 rna ? GO:0003735 ... Q5SHP6 23630274
    33 4v97:B3 (3.516) BS01 rna ? GO:0003735 ... Q5SHQ6 23630274
    34 4v97:B3 (3.516) BS02 rna ? GO:0003735 ... Q5SHQ6 23630274
    35 4v97:B5 (3.516) BS01 rna ? GO:0003735 ... P80339 23630274
    36 4v97:B6 (3.516) BS01 rna ? GO:0000049 ... P35871 23630274
    37 4v97:B7 (3.516) BS01 rna ? GO:0003735 ... P80340 23630274
    38 4v97:B8 (3.516) BS01 rna ? GO:0003735 ... Q5SKU1 23630274
    39 4v97:B9 (3.516) BS01 rna ? GO:0003735 ... Q5SHR2 23630274
    40 4v97:BC (3.516) BS01 rna ? GO:0000049 ... Q5SLP7 23630274
    41 4v97:BC (3.516) BS02 rna ? GO:0000049 ... Q5SLP7 23630274
    42 4v97:BD (3.516) BS01 rna ? GO:0002181 ... P60405 23630274
    43 4v97:BD (3.516) BS02 rna ? GO:0002181 ... P60405 23630274
    44 4v97:BD (3.516) BS03 MG ? GO:0002181 ... P60405 23630274
    45 4v97:BD (3.516) BS04 MG ? GO:0002181 ... P60405 23630274
    46 4v97:BE (3.516) BS01 rna ? GO:0003735 ... Q5SHN8 23630274
    47 4v97:BE (3.516) BS02 MG ? GO:0003735 ... Q5SHN8 23630274
    48 4v97:BF (3.516) BS01 rna ? GO:0003735 ... Q5SHN9 23630274
    49 4v97:BF (3.516) BS02 MG ? GO:0003735 ... Q5SHN9 23630274
    50 4v97:BG (3.516) BS01 rna ? GO:0000049 ... Q5SHQ0 23630274
    51 4v97:BG (3.516) BS02 rna ? GO:0000049 ... Q5SHQ0 23630274
    52 4v97:BG (3.516) BS03 rna ? GO:0000049 ... Q5SHQ0 23630274
    53 4v97:BH (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    54 4v97:BI (3.516) BS01 rna ? GO:0003735 ... Q5SLQ1 23630274
    55 4v97:BN (3.516) BS01 rna ? GO:0003729 ... P60488 23630274
    56 4v97:BN (3.516) BS02 MG ? GO:0003729 ... P60488 23630274
    57 4v97:BO (3.516) BS01 rna ? GO:0003735 ... Q5SHP8 23630274
    58 4v97:BO (3.516) BS02 rna ? GO:0003735 ... Q5SHP8 23630274
    59 4v97:BP (3.516) BS01 rna ? GO:0003735 ... Q5SHQ7 23630274
    60 4v97:BQ (3.516) BS01 rna ? GO:0000049 ... P60489 23630274
    61 4v97:BQ (3.516) BS02 rna ? GO:0000049 ... P60489 23630274
    62 4v97:BR (3.516) BS01 rna ? GO:0003735 ... Q9Z9H5 23630274
    63 4v97:BS (3.516) BS01 rna ? GO:0003735 ... Q5SHQ4 23630274
    64 4v97:BS (3.516) BS02 rna ? GO:0003735 ... Q5SHQ4 23630274
    65 4v97:BT (3.516) BS01 rna ? GO:0003735 ... P60490 23630274
    66 4v97:BT (3.516) BS02 rna ? GO:0003735 ... P60490 23630274
    67 4v97:BU (3.516) BS01 rna ? GO:0000027 ... P60491 23630274
    68 4v97:BU (3.516) BS02 MG ? GO:0000027 ... P60491 23630274
    69 4v97:BV (3.516) BS01 rna ? GO:0003723 ... P60492 23630274
    70 4v97:BW (3.516) BS01 rna ? GO:0003735 ... Q5SHP3 23630274
    71 4v97:BX (3.516) BS01 rna ? GO:0000027 ... Q5SHP0 23630274
    72 4v97:BY (3.516) BS01 rna ? GO:0003723 ... Q5SHP9 23630274
    73 4v97:BZ (3.516) BS01 rna ? GO:0003723 ... Q5SHZ1 23630274
    74 4v97:BZ (3.516) BS02 rna ? GO:0003723 ... Q5SHZ1 23630274
    75 4v97:CB (3.516) BS01 rna ? GO:0003735 ... P80371 23630274
    76 4v97:CC (3.516) BS01 rna ? GO:0003676 ... P80372 23630274
    77 4v97:CD (3.516) BS01 rna ? GO:0003723 ... P80373 23630274
    78 4v97:CD (3.516) BS02 ZN ? GO:0003723 ... P80373 23630274
    79 4v97:CE (3.516) BS01 rna ? GO:0003723 ... Q5SHQ5 23630274
    80 4v97:CF (3.516) BS01 rna ? GO:0003735 ... Q5SLP8 23630274
    81 4v97:CG (3.516) BS01 rna ? GO:0000028 ... P17291 23630274
    82 4v97:CG (3.516) BS02 rna ? GO:0000028 ... P17291 23630274
    83 4v97:CH (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    84 4v97:CI (3.516) BS01 rna ? GO:0000049 ... P80374 23630274
    85 4v97:CI (3.516) BS02 rna ? GO:0000049 ... P80374 23630274
    86 4v97:CJ (3.516) BS01 rna ? GO:0000049 ... Q5SHN7 23630274
    87 4v97:CK (3.516) BS01 rna ? GO:0003735 ... P80376 23630274
    88 4v97:CL (3.516) BS01 rna ? GO:0000049 ... Q5SHN3 23630274
    89 4v97:CM (3.516) BS01 rna ? GO:0000049 ... P80377 23630274
    90 4v97:CM (3.516) BS02 rna ? GO:0000049 ... P80377 23630274
    91 4v97:CM (3.516) BS03 rna ? GO:0000049 ... P80377 23630274
    92 4v97:CN (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    93 4v97:CN (3.516) BS02 ZN N/A GO:0003735 ... N/A 23630274
    94 4v97:CO (3.516) BS01 rna ? GO:0003735 ... Q5SJ76 23630274
    95 4v97:CO (3.516) BS02 rna ? GO:0003735 ... Q5SJ76 23630274
    96 4v97:CP (3.516) BS01 rna ? GO:0003735 ... Q5SJH3 23630274
    97 4v97:CQ (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    98 4v97:CR (3.516) BS01 rna ? GO:0003735 ... Q5SLQ0 23630274
    99 4v97:CS (3.516) BS01 rna ? GO:0000028 ... Q5SHP2 23630274
    100 4v97:CT (3.516) BS01 rna ? GO:0003723 ... P80380 23630274
    101 4v97:D0 (3.516) BS01 rna ? GO:0003735 ... P60493 23630274
    102 4v97:D0 (3.516) BS02 rna ? GO:0003735 ... P60493 23630274
    103 4v97:D0 (3.516) BS03 rna ? GO:0003735 ... P60493 23630274
    104 4v97:D1 (3.516) BS01 rna ? GO:0003735 ... P60494 23630274
    105 4v97:D2 (3.516) BS01 rna ? GO:0003735 ... Q5SHP6 23630274
    106 4v97:D3 (3.516) BS01 rna ? GO:0003735 ... Q5SHQ6 23630274
    107 4v97:D3 (3.516) BS02 rna ? GO:0003735 ... Q5SHQ6 23630274
    108 4v97:D4 (3.516) BS01 rna ? GO:0003735 ... Q5SJE1 23630274
    109 4v97:D5 (3.516) BS01 rna ? GO:0003735 ... P80339 23630274
    110 4v97:D6 (3.516) BS01 rna ? GO:0000049 ... P35871 23630274
    111 4v97:D7 (3.516) BS01 rna ? GO:0003735 ... P80340 23630274
    112 4v97:D8 (3.516) BS01 rna ? GO:0003735 ... Q5SKU1 23630274
    113 4v97:D9 (3.516) BS01 rna ? GO:0003735 ... Q5SHR2 23630274
    114 4v97:DC (3.516) BS01 rna ? GO:0000049 ... Q5SLP7 23630274
    115 4v97:DD (3.516) BS01 rna ? GO:0002181 ... P60405 23630274
    116 4v97:DD (3.516) BS02 rna ? GO:0002181 ... P60405 23630274
    117 4v97:DD (3.516) BS03 MG ? GO:0002181 ... P60405 23630274
    118 4v97:DE (3.516) BS01 rna ? GO:0003735 ... Q5SHN8 23630274
    119 4v97:DF (3.516) BS01 rna ? GO:0003735 ... Q5SHN9 23630274
    120 4v97:DF (3.516) BS02 MG ? GO:0003735 ... Q5SHN9 23630274
    121 4v97:DG (3.516) BS01 rna ? GO:0000049 ... Q5SHQ0 23630274
    122 4v97:DG (3.516) BS02 rna ? GO:0000049 ... Q5SHQ0 23630274
    123 4v97:DH (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    124 4v97:DI (3.516) BS01 rna ? GO:0003735 ... Q5SLQ1 23630274
    125 4v97:DI (3.516) BS02 rna ? GO:0003735 ... Q5SLQ1 23630274
    126 4v97:DN (3.516) BS01 rna ? GO:0003729 ... P60488 23630274
    127 4v97:DO (3.516) BS01 rna ? GO:0003735 ... Q5SHP8 23630274
    128 4v97:DO (3.516) BS02 rna ? GO:0003735 ... Q5SHP8 23630274
    129 4v97:DP (3.516) BS01 rna ? GO:0003735 ... Q5SHQ7 23630274
    130 4v97:DQ (3.516) BS01 rna ? GO:0000049 ... P60489 23630274
    131 4v97:DQ (3.516) BS02 rna ? GO:0000049 ... P60489 23630274
    132 4v97:DQ (3.516) BS03 MG ? GO:0000049 ... P60489 23630274
    133 4v97:DR (3.516) BS01 rna ? GO:0003735 ... Q9Z9H5 23630274
    134 4v97:DS (3.516) BS01 rna ? GO:0003735 ... Q5SHQ4 23630274
    135 4v97:DS (3.516) BS02 rna ? GO:0003735 ... Q5SHQ4 23630274
    136 4v97:DT (3.516) BS01 rna ? GO:0003735 ... P60490 23630274
    137 4v97:DT (3.516) BS02 rna ? GO:0003735 ... P60490 23630274
    138 4v97:DU (3.516) BS01 rna ? GO:0000027 ... P60491 23630274
    139 4v97:DU (3.516) BS02 MG ? GO:0000027 ... P60491 23630274
    140 4v97:DV (3.516) BS01 rna ? GO:0003723 ... P60492 23630274
    141 4v97:DW (3.516) BS01 rna ? GO:0003735 ... Q5SHP3 23630274
    142 4v97:DX (3.516) BS01 rna ? GO:0000027 ... Q5SHP0 23630274
    143 4v97:DY (3.516) BS01 rna ? GO:0003723 ... Q5SHP9 23630274
    144 4v97:DZ (3.516) BS01 rna ? GO:0003723 ... Q5SHZ1 23630274
    145 4v97:DZ (3.516) BS02 rna ? GO:0003723 ... Q5SHZ1 23630274
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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