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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v91:A (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    2 4v91:B (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    3 4v91:C (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    4 4v91:C (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    5 4v91:D (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    6 4v91:D (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    7 4v91:E (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    8 4v91:F (3.7) BS01 rna N/A GO:0000463 ... N/A 24792965
    9 4v91:F (3.7) BS02 rna N/A GO:0000463 ... N/A 24792965
    10 4v91:G (3.7) BS01 rna N/A GO:0042254 ... N/A 24792965
    11 4v91:G (3.7) BS02 rna N/A GO:0042254 ... N/A 24792965
    12 4v91:H (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    13 4v91:I (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    14 4v91:I (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    15 4v91:J (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    16 4v91:J (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    17 4v91:L (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    18 4v91:L (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    19 4v91:M (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    20 4v91:N (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    21 4v91:N (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    22 4v91:O (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    23 4v91:P (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    24 4v91:P (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    25 4v91:Q (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    26 4v91:R (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    27 4v91:S (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    28 4v91:S (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    29 4v91:T (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    30 4v91:T (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    31 4v91:U (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    32 4v91:V (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    33 4v91:W (3.7) BS01 rna N/A N/A N/A 24792965
    34 4v91:X (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    35 4v91:X (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    36 4v91:Y (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    37 4v91:Y (3.7) BS02 rna N/A GO:0003723 ... N/A 24792965
    38 4v91:Z (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    39 4v91:a (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    40 4v91:b (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    41 4v91:c (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    42 4v91:d (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    43 4v91:e (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    44 4v91:f (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    45 4v91:g (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    46 4v91:h (3.7) BS01 rna N/A GO:0000463 ... N/A 24792965
    47 4v91:h (3.7) BS02 rna N/A GO:0000463 ... N/A 24792965
    48 4v91:i (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    49 4v91:j (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    50 4v91:j (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    51 4v91:k (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    52 4v91:l (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    53 4v91:l (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    54 4v91:m (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    55 4v91:o (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    56 4v91:p (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    57 4v91:t (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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