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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v90:AB (2.95) BS01 rna ? GO:0003735 ... P80371 23912278
    2 4v90:AC (2.95) BS01 rna ? GO:0003676 ... P80372 23912278
    3 4v90:AD (2.95) BS01 rna ? GO:0003723 ... P80373 23912278
    4 4v90:AE (2.95) BS01 rna ? GO:0003723 ... Q5SHQ5 23912278
    5 4v90:AF (2.95) BS01 rna ? GO:0003735 ... Q5SLP8 23912278
    6 4v90:AG (2.95) BS01 rna ? GO:0000028 ... P17291 23912278
    7 4v90:AG (2.95) BS02 rna ? GO:0000028 ... P17291 23912278
    8 4v90:AG (2.95) BS03 rna ? GO:0000028 ... P17291 23912278
    9 4v90:AH (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    10 4v90:AI (2.95) BS01 rna ? GO:0000049 ... P80374 23912278
    11 4v90:AJ (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 23912278
    12 4v90:AK (2.95) BS01 rna ? GO:0003735 ... P80376 23912278
    13 4v90:AL (2.95) BS01 rna ? GO:0000049 ... Q5SHN3 23912278
    14 4v90:AM (2.95) BS01 rna ? GO:0000049 ... P80377 23912278
    15 4v90:AN (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    16 4v90:AN (2.95) BS02 ZN N/A GO:0003735 ... N/A 23912278
    17 4v90:AO (2.95) BS01 rna ? GO:0003735 ... Q5SJ76 23912278
    18 4v90:AO (2.95) BS02 rna ? GO:0003735 ... Q5SJ76 23912278
    19 4v90:AP (2.95) BS01 rna ? GO:0003735 ... Q5SJH3 23912278
    20 4v90:AQ (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    21 4v90:AR (2.95) BS01 rna ? GO:0003735 ... Q5SLQ0 23912278
    22 4v90:AS (2.95) BS01 rna ? GO:0000028 ... Q5SHP2 23912278
    23 4v90:AT (2.95) BS01 rna ? GO:0003723 ... P80380 23912278
    24 4v90:AY (2.95) BS01 rna ? GO:0003746 ... Q5SHN5 23912278
    25 4v90:AY (2.95) BS02 rna ? GO:0003746 ... Q5SHN5 23912278
    26 4v90:AY (2.95) BS03 MG ? GO:0003746 ... Q5SHN5 23912278
    27 4v90:B0 (2.95) BS01 rna ? GO:0003735 ... P60493 23912278
    28 4v90:B0 (2.95) BS02 rna ? GO:0003735 ... P60493 23912278
    29 4v90:B1 (2.95) BS01 rna ? GO:0003735 ... P60494 23912278
    30 4v90:B2 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 23912278
    31 4v90:B3 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 23912278
    32 4v90:B3 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 23912278
    33 4v90:B4 (2.95) BS01 rna ? GO:0003735 ... Q5SJE1 23912278
    34 4v90:B5 (2.95) BS01 rna ? GO:0003735 ... P80339 23912278
    35 4v90:B6 (2.95) BS01 rna ? GO:0000049 ... P35871 23912278
    36 4v90:B7 (2.95) BS01 rna ? GO:0003735 ... P80340 23912278
    37 4v90:B8 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 23912278
    38 4v90:B9 (2.95) BS01 rna ? GO:0003735 ... Q5SHR2 23912278
    39 4v90:B9 (2.95) BS02 ZN ? GO:0003735 ... Q5SHR2 23912278
    40 4v90:BC (2.95) BS01 rna ? GO:0000049 ... Q5SLP7 23912278
    41 4v90:BC (2.95) BS02 rna ? GO:0000049 ... Q5SLP7 23912278
    42 4v90:BD (2.95) BS01 rna ? GO:0002181 ... P60405 23912278
    43 4v90:BD (2.95) BS02 rna ? GO:0002181 ... P60405 23912278
    44 4v90:BD (2.95) BS03 MG ? GO:0002181 ... P60405 23912278
    45 4v90:BE (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 23912278
    46 4v90:BF (2.95) BS01 rna ? GO:0003735 ... Q5SHN9 23912278
    47 4v90:BG (2.95) BS01 rna ? GO:0000049 ... Q5SHQ0 23912278
    48 4v90:BG (2.95) BS02 rna ? GO:0000049 ... Q5SHQ0 23912278
    49 4v90:BH (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    50 4v90:BJ (2.95) BS01 rna N/A N/A N/A 23912278
    51 4v90:BK (2.95) BS01 rna N/A N/A N/A 23912278
    52 4v90:BN (2.95) BS01 rna ? GO:0003729 ... P60488 23912278
    53 4v90:BO (2.95) BS01 rna ? GO:0003735 ... Q5SHP8 23912278
    54 4v90:BO (2.95) BS02 rna ? GO:0003735 ... Q5SHP8 23912278
    55 4v90:BP (2.95) BS01 rna ? GO:0003735 ... Q5SHQ7 23912278
    56 4v90:BQ (2.95) BS01 rna ? GO:0000049 ... P60489 23912278
    57 4v90:BQ (2.95) BS02 rna ? GO:0000049 ... P60489 23912278
    58 4v90:BR (2.95) BS01 rna ? GO:0003735 ... Q9Z9H5 23912278
    59 4v90:BS (2.95) BS01 rna ? GO:0003735 ... Q5SHQ4 23912278
    60 4v90:BS (2.95) BS02 rna ? GO:0003735 ... Q5SHQ4 23912278
    61 4v90:BT (2.95) BS01 rna ? GO:0003735 ... P60490 23912278
    62 4v90:BT (2.95) BS02 rna ? GO:0003735 ... P60490 23912278
    63 4v90:BU (2.95) BS01 rna ? GO:0000027 ... P60491 23912278
    64 4v90:BV (2.95) BS01 rna ? GO:0003723 ... P60492 23912278
    65 4v90:BW (2.95) BS01 rna ? GO:0003735 ... Q5SHP3 23912278
    66 4v90:BX (2.95) BS01 rna ? GO:0000027 ... Q5SHP0 23912278
    67 4v90:BY (2.95) BS01 rna ? GO:0003723 ... Q5SHP9 23912278
    68 4v90:BZ (2.95) BS01 rna ? GO:0003723 ... Q5SHZ1 23912278
    69 4v90:BZ (2.95) BS02 rna ? GO:0003723 ... Q5SHZ1 23912278
    70 4v90:BZ (2.95) BS03 MG ? GO:0003723 ... Q5SHZ1 23912278
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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