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BioLiP
Download all results in tab-seperated text for 139 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8n:AB (3.1) BS01 rna ? GO:0003735 ... P80371 23542153
    2 4v8n:AC (3.1) BS01 rna ? GO:0003676 ... P80372 23542153
    3 4v8n:AD (3.1) BS01 rna ? GO:0003723 ... P80373 23542153
    4 4v8n:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 23542153
    5 4v8n:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 23542153
    6 4v8n:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 23542153
    7 4v8n:AG (3.1) BS01 rna ? GO:0000028 ... P17291 23542153
    8 4v8n:AG (3.1) BS02 rna ? GO:0000028 ... P17291 23542153
    9 4v8n:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    10 4v8n:AI (3.1) BS01 rna ? GO:0000049 ... P80374 23542153
    11 4v8n:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 23542153
    12 4v8n:AK (3.1) BS01 rna ? GO:0003735 ... P80376 23542153
    13 4v8n:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 23542153
    14 4v8n:AM (3.1) BS01 rna ? GO:0000049 ... P80377 23542153
    15 4v8n:AM (3.1) BS02 rna ? GO:0000049 ... P80377 23542153
    16 4v8n:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    17 4v8n:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 23542153
    18 4v8n:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 23542153
    19 4v8n:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 23542153
    20 4v8n:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 23542153
    21 4v8n:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    22 4v8n:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 23542153
    23 4v8n:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 23542153
    24 4v8n:AT (3.1) BS01 rna ? GO:0003723 ... P80380 23542153
    25 4v8n:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 23542153
    26 4v8n:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 23542153
    27 4v8n:B0 (3.1) BS03 rna ? GO:0003735 ... P60493 23542153
    28 4v8n:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 23542153
    29 4v8n:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 23542153
    30 4v8n:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 23542153
    31 4v8n:B4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 23542153
    32 4v8n:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 23542153
    33 4v8n:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 23542153
    34 4v8n:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 23542153
    35 4v8n:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 23542153
    36 4v8n:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 23542153
    37 4v8n:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 23542153
    38 4v8n:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 23542153
    39 4v8n:BD (3.1) BS01 rna ? GO:0002181 ... P60405 23542153
    40 4v8n:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 23542153
    41 4v8n:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 23542153
    42 4v8n:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 23542153
    43 4v8n:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 23542153
    44 4v8n:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 23542153
    45 4v8n:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    46 4v8n:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 23542153
    47 4v8n:BI (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 23542153
    48 4v8n:BJ (3.1) BS01 rna N/A N/A N/A 23542153
    49 4v8n:BN (3.1) BS01 rna ? GO:0003729 ... P60488 23542153
    50 4v8n:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 23542153
    51 4v8n:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 23542153
    52 4v8n:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 23542153
    53 4v8n:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 23542153
    54 4v8n:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 23542153
    55 4v8n:BQ (3.1) BS03 rna ? GO:0000049 ... P60489 23542153
    56 4v8n:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 23542153
    57 4v8n:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 23542153
    58 4v8n:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 23542153
    59 4v8n:BT (3.1) BS01 rna ? GO:0003735 ... P60490 23542153
    60 4v8n:BT (3.1) BS02 rna ? GO:0003735 ... P60490 23542153
    61 4v8n:BU (3.1) BS01 rna ? GO:0000027 ... P60491 23542153
    62 4v8n:BV (3.1) BS01 rna ? GO:0003723 ... P60492 23542153
    63 4v8n:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 23542153
    64 4v8n:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 23542153
    65 4v8n:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 23542153
    66 4v8n:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 23542153
    67 4v8n:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 23542153
    68 4v8n:BZ (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 23542153
    69 4v8n:CB (3.1) BS01 rna ? GO:0003735 ... P80371 23542153
    70 4v8n:CC (3.1) BS01 rna ? GO:0003676 ... P80372 23542153
    71 4v8n:CD (3.1) BS01 rna ? GO:0003723 ... P80373 23542153
    72 4v8n:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 23542153
    73 4v8n:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 23542153
    74 4v8n:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 23542153
    75 4v8n:CG (3.1) BS01 rna ? GO:0000028 ... P17291 23542153
    76 4v8n:CG (3.1) BS02 rna ? GO:0000028 ... P17291 23542153
    77 4v8n:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    78 4v8n:CI (3.1) BS01 rna ? GO:0000049 ... P80374 23542153
    79 4v8n:CI (3.1) BS02 rna ? GO:0000049 ... P80374 23542153
    80 4v8n:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 23542153
    81 4v8n:CJ (3.1) BS02 rna ? GO:0000049 ... Q5SHN7 23542153
    82 4v8n:CK (3.1) BS01 rna ? GO:0003735 ... P80376 23542153
    83 4v8n:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 23542153
    84 4v8n:CM (3.1) BS01 rna ? GO:0000049 ... P80377 23542153
    85 4v8n:CM (3.1) BS02 rna ? GO:0000049 ... P80377 23542153
    86 4v8n:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    87 4v8n:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 23542153
    88 4v8n:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 23542153
    89 4v8n:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 23542153
    90 4v8n:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 23542153
    91 4v8n:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    92 4v8n:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 23542153
    93 4v8n:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 23542153
    94 4v8n:CT (3.1) BS01 rna ? GO:0003723 ... P80380 23542153
    95 4v8n:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 23542153
    96 4v8n:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 23542153
    97 4v8n:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 23542153
    98 4v8n:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 23542153
    99 4v8n:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 23542153
    100 4v8n:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 23542153
    101 4v8n:D4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 23542153
    102 4v8n:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 23542153
    103 4v8n:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 23542153
    104 4v8n:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 23542153
    105 4v8n:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 23542153
    106 4v8n:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 23542153
    107 4v8n:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 23542153
    108 4v8n:DC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 23542153
    109 4v8n:DD (3.1) BS01 rna ? GO:0002181 ... P60405 23542153
    110 4v8n:DD (3.1) BS02 rna ? GO:0002181 ... P60405 23542153
    111 4v8n:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 23542153
    112 4v8n:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 23542153
    113 4v8n:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 23542153
    114 4v8n:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 23542153
    115 4v8n:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 23542153
    116 4v8n:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    117 4v8n:DI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 23542153
    118 4v8n:DJ (3.1) BS01 rna N/A N/A N/A 23542153
    119 4v8n:DN (3.1) BS01 rna ? GO:0003729 ... P60488 23542153
    120 4v8n:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 23542153
    121 4v8n:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 23542153
    122 4v8n:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 23542153
    123 4v8n:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 23542153
    124 4v8n:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 23542153
    125 4v8n:DQ (3.1) BS03 rna ? GO:0000049 ... P60489 23542153
    126 4v8n:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 23542153
    127 4v8n:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 23542153
    128 4v8n:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 23542153
    129 4v8n:DT (3.1) BS01 rna ? GO:0003735 ... P60490 23542153
    130 4v8n:DT (3.1) BS02 rna ? GO:0003735 ... P60490 23542153
    131 4v8n:DU (3.1) BS01 rna ? GO:0000027 ... P60491 23542153
    132 4v8n:DV (3.1) BS01 rna ? GO:0003723 ... P60492 23542153
    133 4v8n:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 23542153
    134 4v8n:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 23542153
    135 4v8n:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 23542153
    136 4v8n:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 23542153
    137 4v8n:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 23542153
    138 4v8n:DZ (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 23542153
    139 4v8n:DZ (3.1) BS04 ZN ? GO:0003723 ... Q5SHZ1 23542153
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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