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BioLiP
Download all results in tab-seperated text for 153 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8m:A0 (5.57) BS01 rna ? GO:0003729 ... Q38BK6 23395961
    2 4v8m:A1 (5.57) BS01 rna ? GO:0003723 ... Q386F2 23395961
    3 4v8m:A2 (5.57) BS01 rna ? GO:0000028 ... Q385D9 23395961
    4 4v8m:A2 (5.57) BS02 rna ? GO:0000028 ... Q385D9 23395961
    5 4v8m:A3 (5.57) BS01 rna ? GO:0001558 ... Q38CL9 23395961
    6 4v8m:A4 (5.57) BS01 rna ? GO:0003735 ... Q38FD9 23395961
    7 4v8m:A5 (5.57) BS01 rna ? GO:0000462 ... Q57YL6 23395961
    8 4v8m:A5 (5.57) BS02 rna ? GO:0000462 ... Q57YL6 23395961
    9 4v8m:A5 (5.57) BS03 rna ? GO:0000462 ... Q57YL6 23395961
    10 4v8m:A6 (5.57) BS01 rna ? GO:0003723 ... Q57VP3 23395961
    11 4v8m:A7 (5.57) BS01 rna ? GO:0005080 ... Q383E1 23395961
    12 4v8m:A8 (5.57) BS01 rna N/A GO:0003735 ... N/A 23395961
    13 4v8m:A9 (5.57) BS01 rna ? GO:0003735 ... Q57WI3 23395961
    14 4v8m:AC (5.57) BS01 rna ? GO:0000028 ... Q383I8 23395961
    15 4v8m:AD (5.57) BS01 rna ? GO:0003723 ... Q38B66 23395961
    16 4v8m:AE (5.57) BS01 rna ? GO:0000314 ... Q38CI4 23395961
    17 4v8m:AF (5.57) BS01 rna ? GO:0003735 ... Q385Y8 23395961
    18 4v8m:AG (5.57) BS01 rna ? GO:0003735 ... Q586C2 23395961
    19 4v8m:AG (5.57) BS02 rna ? GO:0003735 ... Q586C2 23395961
    20 4v8m:AH (5.57) BS01 rna ? GO:0000028 ... Q4FKG9 23395961
    21 4v8m:AI (5.57) BS01 rna ? GO:0000028 ... Q57XN7 23395961
    22 4v8m:AJ (5.57) BS01 rna ? GO:0000314 ... Q580K6 23395961
    23 4v8m:AK (5.57) BS01 rna ? GO:0000462 ... Q57VV0 23395961
    24 4v8m:AL (5.57) BS01 rna ? GO:0003735 ... Q382Z8 23395961
    25 4v8m:AM (5.57) BS01 rna ? GO:0000314 ... Q38B69 23395961
    26 4v8m:AO (5.57) BS01 rna ? GO:0000028 ... Q583K7 23395961
    27 4v8m:AP (5.57) BS01 rna ? GO:0003723 ... Q388D3 23395961
    28 4v8m:AQ (5.57) BS01 rna N/A GO:0003735 ... N/A 23395961
    29 4v8m:AS (5.57) BS01 rna ? GO:0003735 ... Q38CD1 23395961
    30 4v8m:AT (5.57) BS01 rna ? GO:0003735 ... Q38AM9 23395961
    31 4v8m:AU (5.57) BS01 rna ? GO:0003735 ... Q57XX0 23395961
    32 4v8m:AV (5.57) BS01 rna ? GO:0003729 ... Q384J9 23395961
    33 4v8m:AW (5.57) BS01 rna ? GO:0000028 ... Q383V7 23395961
    34 4v8m:AX (5.57) BS01 rna ? GO:0003723 ... Q389I7 23395961
    35 4v8m:AY (5.57) BS01 rna ? GO:0003735 ... Q584U5 23395961
    36 4v8m:AZ (5.57) BS01 rna ? GO:0000028 ... Q57U30 23395961
    37 4v8m:BI (5.57) BS01 rna ? GO:0003723 ... P50885 23395961
    38 4v8m:BI (5.57) BS02 rna ? GO:0003723 ... P50885 23395961
    39 4v8m:BJ (5.57) BS01 rna ? GO:0003723 ... Q383V8 23395961
    40 4v8m:BK (5.57) BS01 rna ? GO:0000027 ... Q38EC5 23395961
    41 4v8m:BK (5.57) BS02 rna ? GO:0000027 ... Q38EC5 23395961
    42 4v8m:BK (5.57) BS03 rna ? GO:0000027 ... Q38EC5 23395961
    43 4v8m:BL (5.57) BS01 rna ? GO:0003723 ... Q38EI9 23395961
    44 4v8m:BL (5.57) BS02 rna ? GO:0003723 ... Q38EI9 23395961
    45 4v8m:BM (5.57) BS01 rna ? GO:0003735 ... Q57YK4 23395961
    46 4v8m:BN (5.57) BS01 rna ? GO:0003723 ... Q57V54 23395961
    47 4v8m:BN (5.57) BS02 rna ? GO:0003723 ... Q57V54 23395961
    48 4v8m:BN (5.57) BS03 rna ? GO:0003723 ... Q57V54 23395961
    49 4v8m:BO (5.57) BS01 rna ? GO:0003729 ... Q585J5 23395961
    50 4v8m:BO (5.57) BS02 rna ? GO:0003729 ... Q585J5 23395961
    51 4v8m:BO (5.57) BS03 rna ? GO:0003729 ... Q585J5 23395961
    52 4v8m:BO (5.57) BS04 rna ? GO:0003729 ... Q585J5 23395961
    53 4v8m:BP (5.57) BS01 rna ? GO:0003723 ... P55842 23395961
    54 4v8m:BP (5.57) BS02 rna ? GO:0003723 ... P55842 23395961
    55 4v8m:BP (5.57) BS03 rna ? GO:0003723 ... P55842 23395961
    56 4v8m:BQ (5.57) BS01 rna ? GO:0002181 ... Q38CY7 23395961
    57 4v8m:BQ (5.57) BS02 rna ? GO:0002181 ... Q38CY7 23395961
    58 4v8m:BQ (5.57) BS03 rna ? GO:0002181 ... Q38CY7 23395961
    59 4v8m:BR (5.57) BS01 rna ? GO:0002181 ... Q385T6 23395961
    60 4v8m:BR (5.57) BS02 rna ? GO:0002181 ... Q385T6 23395961
    61 4v8m:BR (5.57) BS03 rna ? GO:0002181 ... Q385T6 23395961
    62 4v8m:BR (5.57) BS04 rna ? GO:0002181 ... Q385T6 23395961
    63 4v8m:BS (5.57) BS01 rna ? GO:0003729 ... Q382C4 23395961
    64 4v8m:BS (5.57) BS02 rna ? GO:0003729 ... Q382C4 23395961
    65 4v8m:BS (5.57) BS03 rna ? GO:0003729 ... Q382C4 23395961
    66 4v8m:BT (5.57) BS01 rna ? GO:0003723 ... Q57ZI7 23395961
    67 4v8m:BT (5.57) BS02 rna ? GO:0003723 ... Q57ZI7 23395961
    68 4v8m:BT (5.57) BS03 rna ? GO:0003723 ... Q57ZI7 23395961
    69 4v8m:BT (5.57) BS04 rna ? GO:0003723 ... Q57ZI7 23395961
    70 4v8m:BT (5.57) BS05 rna ? GO:0003723 ... Q57ZI7 23395961
    71 4v8m:BU (5.57) BS01 rna ? GO:0003735 ... Q4FKD4 23395961
    72 4v8m:BU (5.57) BS02 rna ? GO:0003735 ... Q4FKD4 23395961
    73 4v8m:BU (5.57) BS03 rna ? GO:0003735 ... Q4FKD4 23395961
    74 4v8m:BV (5.57) BS01 rna ? GO:0002181 ... Q383R3 23395961
    75 4v8m:BV (5.57) BS02 rna ? GO:0002181 ... Q383R3 23395961
    76 4v8m:BW (5.57) BS01 rna ? GO:0003735 ... Q38DP2 23395961
    77 4v8m:BW (5.57) BS02 rna ? GO:0003735 ... Q38DP2 23395961
    78 4v8m:BX (5.57) BS01 rna ? GO:0000027 ... Q57ZH2 23395961
    79 4v8m:BX (5.57) BS02 rna ? GO:0000027 ... Q57ZH2 23395961
    80 4v8m:BX (5.57) BS03 rna ? GO:0000027 ... Q57ZH2 23395961
    81 4v8m:BY (5.57) BS01 rna ? GO:0002181 ... Q38B56 23395961
    82 4v8m:BY (5.57) BS02 rna ? GO:0002181 ... Q38B56 23395961
    83 4v8m:BY (5.57) BS03 rna ? GO:0002181 ... Q38B56 23395961
    84 4v8m:BZ (5.57) BS01 rna ? GO:0002181 ... Q38D25 23395961
    85 4v8m:BZ (5.57) BS02 rna ? GO:0002181 ... Q38D25 23395961
    86 4v8m:Ba (5.57) BS01 rna ? GO:0003735 ... Q381J6 23395961
    87 4v8m:Ba (5.57) BS02 rna ? GO:0003735 ... Q381J6 23395961
    88 4v8m:Ba (5.57) BS03 rna ? GO:0003735 ... Q381J6 23395961
    89 4v8m:Bb (5.57) BS01 rna ? GO:0003735 ... Q38DN9 23395961
    90 4v8m:Bb (5.57) BS02 rna ? GO:0003735 ... Q38DN9 23395961
    91 4v8m:Bc (5.57) BS01 rna ? GO:0003729 ... Q385E9 23395961
    92 4v8m:Bd (5.57) BS01 rna ? GO:0002181 ... Q383S6 23395961
    93 4v8m:Bd (5.57) BS02 rna ? GO:0002181 ... Q383S6 23395961
    94 4v8m:Be (5.57) BS01 rna ? GO:0002181 ... Q57W56 23395961
    95 4v8m:Be (5.57) BS02 rna ? GO:0002181 ... Q57W56 23395961
    96 4v8m:Be (5.57) BS03 rna ? GO:0002181 ... Q57W56 23395961
    97 4v8m:Be (5.57) BS04 rna ? GO:0002181 ... Q57W56 23395961
    98 4v8m:Bf (5.57) BS01 rna ? GO:0003723 ... Q581Q1 23395961
    99 4v8m:Bf (5.57) BS02 rna ? GO:0003723 ... Q581Q1 23395961
    100 4v8m:Bf (5.57) BS03 rna ? GO:0003723 ... Q581Q1 23395961
    101 4v8m:Bf (5.57) BS04 rna ? GO:0003723 ... Q581Q1 23395961
    102 4v8m:Bg (5.57) BS01 rna ? GO:0003723 ... Q38BI9 23395961
    103 4v8m:Bg (5.57) BS02 rna ? GO:0003723 ... Q38BI9 23395961
    104 4v8m:Bh (5.57) BS01 rna ? GO:0002181 ... Q38DH8 23395961
    105 4v8m:Bh (5.57) BS02 rna ? GO:0002181 ... Q38DH8 23395961
    106 4v8m:Bh (5.57) BS03 rna ? GO:0002181 ... Q38DH8 23395961
    107 4v8m:Bh (5.57) BS04 rna ? GO:0002181 ... Q38DH8 23395961
    108 4v8m:Bi (5.57) BS01 rna ? GO:0003735 ... Q38CL1 23395961
    109 4v8m:Bj (5.57) BS01 rna ? GO:0003735 ... Q383V6 23395961
    110 4v8m:Bj (5.57) BS02 rna ? GO:0003735 ... Q383V6 23395961
    111 4v8m:Bj (5.57) BS03 rna ? GO:0003735 ... Q383V6 23395961
    112 4v8m:Bk (5.57) BS01 rna ? GO:0000463 ... Q38FW8 23395961
    113 4v8m:Bk (5.57) BS02 rna ? GO:0000463 ... Q38FW8 23395961
    114 4v8m:Bl (5.57) BS01 rna ? GO:0002181 ... Q584G9 23395961
    115 4v8m:Bl (5.57) BS02 rna ? GO:0002181 ... Q584G9 23395961
    116 4v8m:Bl (5.57) BS03 rna ? GO:0002181 ... Q584G9 23395961
    117 4v8m:Bl (5.57) BS04 rna ? GO:0002181 ... Q584G9 23395961
    118 4v8m:Bm (5.57) BS01 rna ? GO:0002181 ... Q38CY6 23395961
    119 4v8m:Bm (5.57) BS02 rna ? GO:0002181 ... Q38CY6 23395961
    120 4v8m:Bn (5.57) BS01 rna ? GO:0003723 ... Q386L1 23395961
    121 4v8m:Bn (5.57) BS02 rna ? GO:0003723 ... Q386L1 23395961
    122 4v8m:Bn (5.57) BS03 rna ? GO:0003723 ... Q386L1 23395961
    123 4v8m:Bo (5.57) BS01 rna ? GO:0003735 ... Q38AW9 23395961
    124 4v8m:Bo (5.57) BS02 rna ? GO:0003735 ... Q38AW9 23395961
    125 4v8m:Bo (5.57) BS03 rna ? GO:0003735 ... Q38AW9 23395961
    126 4v8m:Bp (5.57) BS01 rna ? GO:0003735 ... Q38FV6 23395961
    127 4v8m:Bp (5.57) BS02 rna ? GO:0003735 ... Q38FV6 23395961
    128 4v8m:Bp (5.57) BS03 rna ? GO:0003735 ... Q38FV6 23395961
    129 4v8m:Bq (5.57) BS01 rna ? GO:0003735 ... Q57UJ8 23395961
    130 4v8m:Bq (5.57) BS02 rna ? GO:0003735 ... Q57UJ8 23395961
    131 4v8m:Bq (5.57) BS03 rna ? GO:0003735 ... Q57UJ8 23395961
    132 4v8m:Br (5.57) BS01 rna ? GO:0003723 ... Q582N2 23395961
    133 4v8m:Br (5.57) BS02 rna ? GO:0003723 ... Q582N2 23395961
    134 4v8m:Br (5.57) BS03 rna ? GO:0003723 ... Q582N2 23395961
    135 4v8m:Bs (5.57) BS01 rna ? GO:0003735 ... P21899 23395961
    136 4v8m:Bs (5.57) BS02 rna ? GO:0003735 ... P21899 23395961
    137 4v8m:Bs (5.57) BS03 rna ? GO:0003735 ... P21899 23395961
    138 4v8m:Bt (5.57) BS01 rna ? GO:0003735 ... D7SG81 23395961
    139 4v8m:Bt (5.57) BS02 rna ? GO:0003735 ... D7SG81 23395961
    140 4v8m:Bu (5.57) BS01 rna ? GO:0000027 ... Q38CY8 23395961
    141 4v8m:Bu (5.57) BS02 rna ? GO:0000027 ... Q38CY8 23395961
    142 4v8m:Bu (5.57) BS03 rna ? GO:0000027 ... Q38CY8 23395961
    143 4v8m:Bv (5.57) BS01 rna ? GO:0000027 ... Q389K1 23395961
    144 4v8m:Bv (5.57) BS02 rna ? GO:0000027 ... Q389K1 23395961
    145 4v8m:Bw (5.57) BS01 rna ? GO:0000463 ... Q57V35 23395961
    146 4v8m:Bw (5.57) BS02 rna ? GO:0000463 ... Q57V35 23395961
    147 4v8m:Bx (5.57) BS01 rna ? GO:0000470 ... Q57VM1 23395961
    148 4v8m:Bx (5.57) BS02 rna ? GO:0000470 ... Q57VM1 23395961
    149 4v8m:Bx (5.57) BS03 rna ? GO:0000470 ... Q57VM1 23395961
    150 4v8m:By (5.57) BS01 rna ? GO:0002181 ... Q38CD0 23395961
    151 4v8m:By (5.57) BS02 rna ? GO:0002181 ... Q38CD0 23395961
    152 4v8m:By (5.57) BS03 rna ? GO:0002181 ... Q38CD0 23395961
    153 4v8m:By (5.57) BS04 rna ? GO:0002181 ... Q38CD0 23395961
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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