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BioLiP
Download all results in tab-seperated text for 134 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8g:AB (3.0) BS01 rna ? GO:0003735 ... P80371 22605777
    2 4v8g:AC (3.0) BS01 rna ? GO:0003676 ... P80372 22605777
    3 4v8g:AD (3.0) BS01 rna ? GO:0003723 ... P80373 22605777
    4 4v8g:AD (3.0) BS02 ZN ? GO:0003723 ... P80373 22605777
    5 4v8g:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    6 4v8g:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    7 4v8g:AG (3.0) BS01 rna ? GO:0000028 ... P17291 22605777
    8 4v8g:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    9 4v8g:AI (3.0) BS01 rna ? GO:0000049 ... P80374 22605777
    10 4v8g:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    11 4v8g:AK (3.0) BS01 rna ? GO:0003735 ... P80376 22605777
    12 4v8g:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    13 4v8g:AM (3.0) BS01 rna ? GO:0000049 ... P80377 22605777
    14 4v8g:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    15 4v8g:AN (3.0) BS02 ZN N/A GO:0003735 ... N/A 22605777
    16 4v8g:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    17 4v8g:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    18 4v8g:AO (3.0) BS03 MG ? GO:0003735 ... Q5SJ76 22605777
    19 4v8g:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    20 4v8g:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    21 4v8g:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    22 4v8g:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    23 4v8g:AT (3.0) BS01 rna ? GO:0003723 ... P80380 22605777
    24 4v8g:AV (3.0) BS01 rna ? GO:0005737 ... P0AFW2 22605777
    25 4v8g:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 22605777
    26 4v8g:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 22605777
    27 4v8g:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 22605777
    28 4v8g:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    29 4v8g:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    30 4v8g:B3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    31 4v8g:B3 (3.0) BS03 MG ? GO:0003735 ... Q5SHQ6 22605777
    32 4v8g:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    33 4v8g:B4 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    34 4v8g:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 22605777
    35 4v8g:B5 (3.0) BS02 ZN ? GO:0003735 ... P80339 22605777
    36 4v8g:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 22605777
    37 4v8g:B6 (3.0) BS02 ZN ? GO:0000049 ... P35871 22605777
    38 4v8g:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 22605777
    39 4v8g:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    40 4v8g:B9 (3.0) BS01 rna ? GO:0003735 ... Q5SHR2 22605777
    41 4v8g:B9 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 22605777
    42 4v8g:BD (3.0) BS01 rna ? GO:0002181 ... P60405 22605777
    43 4v8g:BD (3.0) BS02 rna ? GO:0002181 ... P60405 22605777
    44 4v8g:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    45 4v8g:BE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 22605777
    46 4v8g:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    47 4v8g:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    48 4v8g:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    49 4v8g:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    50 4v8g:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    51 4v8g:BN (3.0) BS01 rna ? GO:0003729 ... P60488 22605777
    52 4v8g:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    53 4v8g:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    54 4v8g:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    55 4v8g:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 22605777
    56 4v8g:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 22605777
    57 4v8g:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    58 4v8g:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    59 4v8g:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    60 4v8g:BT (3.0) BS01 rna ? GO:0003735 ... P60490 22605777
    61 4v8g:BT (3.0) BS02 rna ? GO:0003735 ... P60490 22605777
    62 4v8g:BU (3.0) BS01 rna ? GO:0000027 ... P60491 22605777
    63 4v8g:BV (3.0) BS01 rna ? GO:0003723 ... P60492 22605777
    64 4v8g:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    65 4v8g:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22605777
    66 4v8g:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22605777
    67 4v8g:BY (3.0) BS02 ZN ? GO:0003723 ... Q5SHP9 22605777
    68 4v8g:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    69 4v8g:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    70 4v8g:CB (3.0) BS01 rna ? GO:0003735 ... P80371 22605777
    71 4v8g:CC (3.0) BS01 rna ? GO:0003676 ... P80372 22605777
    72 4v8g:CD (3.0) BS01 rna ? GO:0003723 ... P80373 22605777
    73 4v8g:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    74 4v8g:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    75 4v8g:CG (3.0) BS01 rna ? GO:0000028 ... P17291 22605777
    76 4v8g:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    77 4v8g:CI (3.0) BS01 rna ? GO:0000049 ... P80374 22605777
    78 4v8g:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    79 4v8g:CK (3.0) BS01 rna ? GO:0003735 ... P80376 22605777
    80 4v8g:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    81 4v8g:CM (3.0) BS01 rna ? GO:0000049 ... P80377 22605777
    82 4v8g:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    83 4v8g:CN (3.0) BS02 ZN N/A GO:0003735 ... N/A 22605777
    84 4v8g:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    85 4v8g:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    86 4v8g:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    87 4v8g:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    88 4v8g:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    89 4v8g:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    90 4v8g:CT (3.0) BS01 rna ? GO:0003723 ... P80380 22605777
    91 4v8g:CV (3.0) BS01 rna ? GO:0005737 ... P0AFW2 22605777
    92 4v8g:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 22605777
    93 4v8g:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 22605777
    94 4v8g:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 22605777
    95 4v8g:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    96 4v8g:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    97 4v8g:D3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    98 4v8g:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    99 4v8g:D4 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    100 4v8g:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 22605777
    101 4v8g:D5 (3.0) BS02 ZN ? GO:0003735 ... P80339 22605777
    102 4v8g:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 22605777
    103 4v8g:D6 (3.0) BS02 ZN ? GO:0000049 ... P35871 22605777
    104 4v8g:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 22605777
    105 4v8g:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    106 4v8g:D9 (3.0) BS01 rna ? GO:0003735 ... Q5SHR2 22605777
    107 4v8g:D9 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 22605777
    108 4v8g:DD (3.0) BS01 rna ? GO:0002181 ... P60405 22605777
    109 4v8g:DD (3.0) BS02 rna ? GO:0002181 ... P60405 22605777
    110 4v8g:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    111 4v8g:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    112 4v8g:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    113 4v8g:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    114 4v8g:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    115 4v8g:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    116 4v8g:DN (3.0) BS01 rna ? GO:0003729 ... P60488 22605777
    117 4v8g:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    118 4v8g:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    119 4v8g:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    120 4v8g:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 22605777
    121 4v8g:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 22605777
    122 4v8g:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    123 4v8g:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    124 4v8g:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    125 4v8g:DT (3.0) BS01 rna ? GO:0003735 ... P60490 22605777
    126 4v8g:DT (3.0) BS02 rna ? GO:0003735 ... P60490 22605777
    127 4v8g:DU (3.0) BS01 rna ? GO:0000027 ... P60491 22605777
    128 4v8g:DV (3.0) BS01 rna ? GO:0003723 ... P60492 22605777
    129 4v8g:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    130 4v8g:DX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22605777
    131 4v8g:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22605777
    132 4v8g:DY (3.0) BS02 ZN ? GO:0003723 ... Q5SHP9 22605777
    133 4v8g:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    134 4v8g:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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