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BioLiP
Download all results in tab-seperated text for 118 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v84:AB (3.4) BS01 rna ? GO:0003735 ... P62662 21245352
    2 4v84:AC (3.4) BS01 rna ? GO:0003676 ... P62663 21245352
    3 4v84:AD (3.4) BS01 rna ? GO:0003723 ... P62664 21245352
    4 4v84:AD (3.4) BS02 MG ? GO:0003723 ... P62664 21245352
    5 4v84:AE (3.4) BS01 rna ? GO:0003723 ... P62665 21245352
    6 4v84:AF (3.4) BS01 rna ? GO:0003735 ... P62666 21245352
    7 4v84:AG (3.4) BS01 rna ? GO:0000028 ... P62667 21245352
    8 4v84:AH (3.4) BS01 rna ? GO:0003735 ... P62668 21245352
    9 4v84:AI (3.4) BS01 rna ? GO:0000049 ... P62669 21245352
    10 4v84:AI (3.4) BS02 rna ? GO:0000049 ... P62669 21245352
    11 4v84:AJ (3.4) BS01 rna ? GO:0000049 ... P62653 21245352
    12 4v84:AK (3.4) BS01 rna ? GO:0003735 ... P62654 21245352
    13 4v84:AL (3.4) BS01 rna ? GO:0000049 ... P61941 21245352
    14 4v84:AM (3.4) BS01 rna ? GO:0000049 ... P62655 21245352
    15 4v84:AN (3.4) BS01 rna ? GO:0003735 ... P62656 21245352
    16 4v84:AN (3.4) BS02 ZN ? GO:0003735 ... P62656 21245352
    17 4v84:AO (3.4) BS01 rna ? GO:0003735 ... P62657 21245352
    18 4v84:AO (3.4) BS02 rna ? GO:0003735 ... P62657 21245352
    19 4v84:AP (3.4) BS01 rna ? GO:0003735 ... P62238 21245352
    20 4v84:AQ (3.4) BS01 rna ? GO:0003735 ... P62658 21245352
    21 4v84:AR (3.4) BS01 rna ? GO:0003735 ... P62659 21245352
    22 4v84:AS (3.4) BS01 rna ? GO:0003723 ... P62660 21245352
    23 4v84:AT (3.4) BS01 rna ? GO:0003723 ... P62661 21245352
    24 4v84:B2 (3.4) BS01 rna ? GO:0003735 ... P62652 21245352
    25 4v84:B3 (3.4) BS01 rna ? GO:0003735 ... Q72GW3 21245352
    26 4v84:B4 (3.4) BS01 rna ? GO:0003735 ... P80340 21245352
    27 4v84:B5 (3.4) BS01 rna ? GO:0003735 ... Q72L77 21245352
    28 4v84:BC (3.4) BS01 rna ? GO:0002181 ... Q72I07 21245352
    29 4v84:BD (3.4) BS01 rna ? GO:0003735 ... Q72I04 21245352
    30 4v84:BE (3.4) BS01 rna ? GO:0003735 ... Q72I05 21245352
    31 4v84:BF (3.4) BS01 rna ? GO:0000049 ... Q72I16 21245352
    32 4v84:BF (3.4) BS02 rna ? GO:0000049 ... Q72I16 21245352
    33 4v84:BG (3.4) BS01 rna ? GO:0003735 ... Q72I19 21245352
    34 4v84:BH (3.4) BS01 rna ? GO:0003735 ... Q72GV5 21245352
    35 4v84:BJ (3.4) BS01 rna ? GO:0003729 ... Q72IN1 21245352
    36 4v84:BK (3.4) BS01 rna ? GO:0003735 ... Q72I14 21245352
    37 4v84:BK (3.4) BS02 rna ? GO:0003735 ... Q72I14 21245352
    38 4v84:BL (3.4) BS01 rna ? GO:0003735 ... Q72I23 21245352
    39 4v84:BM (3.4) BS01 rna ? GO:0000049 ... Q72I11 21245352
    40 4v84:BM (3.4) BS02 rna ? GO:0000049 ... Q72I11 21245352
    41 4v84:BN (3.4) BS01 rna ? GO:0003735 ... Q72I33 21245352
    42 4v84:BO (3.4) BS01 rna ? GO:0003735 ... Q72I20 21245352
    43 4v84:BO (3.4) BS02 rna ? GO:0003735 ... Q72I20 21245352
    44 4v84:BP (3.4) BS01 rna ? GO:0003735 ... Q72JU9 21245352
    45 4v84:BP (3.4) BS02 rna ? GO:0003735 ... Q72JU9 21245352
    46 4v84:BQ (3.4) BS01 rna ? GO:0000027 ... Q72L76 21245352
    47 4v84:BR (3.4) BS01 rna ? GO:0003723 ... Q72HR2 21245352
    48 4v84:BS (3.4) BS01 rna ? GO:0003735 ... Q72I09 21245352
    49 4v84:BT (3.4) BS01 rna ? GO:0000027 ... Q72I06 21245352
    50 4v84:BU (3.4) BS01 rna ? GO:0003723 ... Q72I15 21245352
    51 4v84:BV (3.4) BS01 rna ? GO:0003723 ... Q72IA7 21245352
    52 4v84:BV (3.4) BS02 rna ? GO:0003723 ... Q72IA7 21245352
    53 4v84:BW (3.4) BS01 rna ? GO:0003735 ... Q72HR3 21245352
    54 4v84:BW (3.4) BS02 rna ? GO:0003735 ... Q72HR3 21245352
    55 4v84:BX (3.4) BS01 rna ? GO:0005840 ... Q72G84 21245352
    56 4v84:BY (3.4) BS01 rna ? GO:0003735 ... Q72I12 21245352
    57 4v84:BZ (3.4) BS01 rna ? GO:0003735 ... Q72I22 21245352
    58 4v84:BZ (3.4) BS02 rna ? GO:0003735 ... Q72I22 21245352
    59 4v84:CB (3.4) BS01 rna ? GO:0003735 ... P62662 21245352
    60 4v84:CC (3.4) BS01 rna ? GO:0003676 ... P62663 21245352
    61 4v84:CD (3.4) BS01 rna ? GO:0003723 ... P62664 21245352
    62 4v84:CE (3.4) BS01 rna ? GO:0003723 ... P62665 21245352
    63 4v84:CF (3.4) BS01 rna ? GO:0003735 ... P62666 21245352
    64 4v84:CG (3.4) BS01 rna ? GO:0000028 ... P62667 21245352
    65 4v84:CH (3.4) BS01 rna ? GO:0003735 ... P62668 21245352
    66 4v84:CI (3.4) BS01 rna ? GO:0000049 ... P62669 21245352
    67 4v84:CI (3.4) BS02 rna ? GO:0000049 ... P62669 21245352
    68 4v84:CJ (3.4) BS01 rna ? GO:0000049 ... P62653 21245352
    69 4v84:CK (3.4) BS01 rna ? GO:0003735 ... P62654 21245352
    70 4v84:CL (3.4) BS01 rna ? GO:0000049 ... P61941 21245352
    71 4v84:CM (3.4) BS01 rna ? GO:0000049 ... P62655 21245352
    72 4v84:CN (3.4) BS01 rna ? GO:0003735 ... P62656 21245352
    73 4v84:CN (3.4) BS02 ZN ? GO:0003735 ... P62656 21245352
    74 4v84:CO (3.4) BS01 rna ? GO:0003735 ... P62657 21245352
    75 4v84:CO (3.4) BS02 rna ? GO:0003735 ... P62657 21245352
    76 4v84:CP (3.4) BS01 rna ? GO:0003735 ... P62238 21245352
    77 4v84:CQ (3.4) BS01 rna ? GO:0003735 ... P62658 21245352
    78 4v84:CR (3.4) BS01 rna ? GO:0003735 ... P62659 21245352
    79 4v84:CS (3.4) BS01 rna ? GO:0003723 ... P62660 21245352
    80 4v84:CT (3.4) BS01 rna ? GO:0003723 ... P62661 21245352
    81 4v84:D2 (3.4) BS01 rna ? GO:0003735 ... P62652 21245352
    82 4v84:D3 (3.4) BS01 rna ? GO:0003735 ... Q72GW3 21245352
    83 4v84:D4 (3.4) BS01 rna ? GO:0003735 ... P80340 21245352
    84 4v84:D5 (3.4) BS01 rna ? GO:0003735 ... Q72L77 21245352
    85 4v84:DC (3.4) BS01 rna ? GO:0002181 ... Q72I07 21245352
    86 4v84:DD (3.4) BS01 rna ? GO:0003735 ... Q72I04 21245352
    87 4v84:DE (3.4) BS01 rna ? GO:0003735 ... Q72I05 21245352
    88 4v84:DE (3.4) BS02 MG ? GO:0003735 ... Q72I05 21245352
    89 4v84:DF (3.4) BS01 rna ? GO:0000049 ... Q72I16 21245352
    90 4v84:DF (3.4) BS02 rna ? GO:0000049 ... Q72I16 21245352
    91 4v84:DG (3.4) BS01 rna ? GO:0003735 ... Q72I19 21245352
    92 4v84:DH (3.4) BS01 rna ? GO:0003735 ... Q72GV5 21245352
    93 4v84:DI (3.4) BS01 rna ? N/A Q72GS1 21245352
    94 4v84:DJ (3.4) BS01 rna ? GO:0003729 ... Q72IN1 21245352
    95 4v84:DK (3.4) BS01 rna ? GO:0003735 ... Q72I14 21245352
    96 4v84:DK (3.4) BS02 rna ? GO:0003735 ... Q72I14 21245352
    97 4v84:DK (3.4) BS03 MG ? GO:0003735 ... Q72I14 21245352
    98 4v84:DL (3.4) BS01 rna ? GO:0003735 ... Q72I23 21245352
    99 4v84:DM (3.4) BS01 rna ? GO:0000049 ... Q72I11 21245352
    100 4v84:DM (3.4) BS02 rna ? GO:0000049 ... Q72I11 21245352
    101 4v84:DN (3.4) BS01 rna ? GO:0003735 ... Q72I33 21245352
    102 4v84:DO (3.4) BS01 rna ? GO:0003735 ... Q72I20 21245352
    103 4v84:DO (3.4) BS02 rna ? GO:0003735 ... Q72I20 21245352
    104 4v84:DP (3.4) BS01 rna ? GO:0003735 ... Q72JU9 21245352
    105 4v84:DP (3.4) BS02 rna ? GO:0003735 ... Q72JU9 21245352
    106 4v84:DQ (3.4) BS01 rna ? GO:0000027 ... Q72L76 21245352
    107 4v84:DR (3.4) BS01 rna ? GO:0003723 ... Q72HR2 21245352
    108 4v84:DS (3.4) BS01 rna ? GO:0003735 ... Q72I09 21245352
    109 4v84:DT (3.4) BS01 rna ? GO:0000027 ... Q72I06 21245352
    110 4v84:DU (3.4) BS01 rna ? GO:0003723 ... Q72I15 21245352
    111 4v84:DV (3.4) BS01 rna ? GO:0003723 ... Q72IA7 21245352
    112 4v84:DV (3.4) BS02 rna ? GO:0003723 ... Q72IA7 21245352
    113 4v84:DW (3.4) BS01 rna ? GO:0003735 ... Q72HR3 21245352
    114 4v84:DW (3.4) BS02 rna ? GO:0003735 ... Q72HR3 21245352
    115 4v84:DX (3.4) BS01 rna ? GO:0005840 ... Q72G84 21245352
    116 4v84:DY (3.4) BS01 rna ? GO:0003735 ... Q72I12 21245352
    117 4v84:DZ (3.4) BS01 rna ? GO:0003735 ... Q72I22 21245352
    118 4v84:DZ (3.4) BS02 rna ? GO:0003735 ... Q72I22 21245352
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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