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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7h:AB (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    2 4v7h:AC (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    3 4v7h:AD (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    4 4v7h:AE (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    5 4v7h:AG (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    6 4v7h:AH (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    7 4v7h:AI (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    8 4v7h:AJ (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    9 4v7h:AK (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    10 4v7h:AL (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    11 4v7h:AM (8.9) BS01 rna N/A GO:0003676 ... N/A 20004163
    12 4v7h:AN (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    13 4v7h:AO (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    14 4v7h:AO (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    15 4v7h:AQ (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    16 4v7h:AR (8.9) BS01 rna N/A GO:0043022 ... N/A 20004163
    17 4v7h:AS (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    18 4v7h:AT (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    19 4v7h:B0 (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    20 4v7h:B1 (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    21 4v7h:B1 (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    22 4v7h:B2 (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    23 4v7h:B8 (8.9) BS01 rna N/A N/A N/A 20004163
    24 4v7h:B9 (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    25 4v7h:BA (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    26 4v7h:BA (8.9) BS02 rna N/A GO:0003723 ... N/A 20004163
    27 4v7h:BB (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    28 4v7h:BB (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    29 4v7h:BC (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    30 4v7h:BD (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    31 4v7h:BD (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    32 4v7h:BE (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    33 4v7h:BE (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    34 4v7h:BF (8.9) BS01 rna N/A GO:0000463 ... N/A 20004163
    35 4v7h:BF (8.9) BS02 rna N/A GO:0000463 ... N/A 20004163
    36 4v7h:BG (8.9) BS01 rna N/A GO:0042254 ... N/A 20004163
    37 4v7h:BG (8.9) BS02 rna N/A GO:0042254 ... N/A 20004163
    38 4v7h:BH (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    39 4v7h:BI (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    40 4v7h:BI (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    41 4v7h:BJ (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    42 4v7h:BJ (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    43 4v7h:BK (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    44 4v7h:BL (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    45 4v7h:BL (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    46 4v7h:BM (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    47 4v7h:BN (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    48 4v7h:BN (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    49 4v7h:BO (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    50 4v7h:BP (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    51 4v7h:BP (8.9) BS02 rna N/A GO:0003723 ... N/A 20004163
    52 4v7h:BQ (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    53 4v7h:BQ (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    54 4v7h:BR (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    55 4v7h:BR (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    56 4v7h:BS (8.9) BS01 rna N/A N/A N/A 20004163
    57 4v7h:BT (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    58 4v7h:BT (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    59 4v7h:BU (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    60 4v7h:BU (8.9) BS02 rna N/A GO:0003723 ... N/A 20004163
    61 4v7h:BV (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    62 4v7h:BW (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    63 4v7h:BX (8.9) BS01 rna N/A GO:0000463 ... N/A 20004163
    64 4v7h:BX (8.9) BS02 rna N/A GO:0000463 ... N/A 20004163
    65 4v7h:BY (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    66 4v7h:BY (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    67 4v7h:BZ (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    68 4v7h:BZ (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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