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BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v6u:A3 (6.6) BS01 rna ? GO:0001682 ... Q8U160 23222135
    2 4v6u:AA (6.6) BS01 rna ? GO:0003735 ... Q8TZE1 23222135
    3 4v6u:AA (6.6) BS02 rna ? GO:0003735 ... Q8TZE1 23222135
    4 4v6u:AB (6.6) BS01 rna ? GO:0000028 ... Q8U0F0 23222135
    5 4v6u:AC (6.6) BS01 rna ? GO:0003676 ... Q8U004 23222135
    6 4v6u:AD (6.6) BS01 rna ? GO:0003723 ... P61993 23222135
    7 4v6u:AE (6.6) BS01 rna ? GO:0003723 ... Q8U011 23222135
    8 4v6u:AF (6.6) BS01 rna ? GO:0003723 ... Q8U017 23222135
    9 4v6u:AG (6.6) BS01 rna ? GO:0003735 ... Q8U3H8 23222135
    10 4v6u:AH (6.6) BS01 rna ? GO:0000028 ... Q8U0M8 23222135
    11 4v6u:AH (6.6) BS02 rna ? GO:0000028 ... Q8U0M8 23222135
    12 4v6u:AI (6.6) BS01 rna ? GO:0003735 ... Q8U014 23222135
    13 4v6u:AJ (6.6) BS01 rna ? GO:0000462 ... Q8U1Y5 23222135
    14 4v6u:AJ (6.6) BS02 rna ? GO:0000462 ... Q8U1Y5 23222135
    15 4v6u:AK (6.6) BS01 rna ? GO:0000462 ... Q8U0E7 23222135
    16 4v6u:AL (6.6) BS01 rna ? GO:0000049 ... P61885 23222135
    17 4v6u:AM (6.6) BS01 rna ? GO:0003735 ... Q8U0E3 23222135
    18 4v6u:AM (6.6) BS02 rna ? GO:0003735 ... Q8U0E3 23222135
    19 4v6u:AN (6.6) BS01 rna ? GO:0003735 ... P61995 23222135
    20 4v6u:AO (6.6) BS01 rna ? GO:0003676 ... Q8U0E2 23222135
    21 4v6u:AO (6.6) BS02 rna ? GO:0003676 ... Q8U0E2 23222135
    22 4v6u:AP (6.6) BS01 rna ? GO:0003723 ... Q8U013 23222135
    23 4v6u:AQ (6.6) BS01 rna ? GO:0003735 ... Q8TZD9 23222135
    24 4v6u:AQ (6.6) BS02 rna ? GO:0003735 ... Q8TZD9 23222135
    25 4v6u:AR (6.6) BS01 rna ? GO:0003735 ... Q8U008 23222135
    26 4v6u:AS (6.6) BS01 rna ? GO:0003735 ... Q8U0U1 23222135
    27 4v6u:AT (6.6) BS01 rna ? GO:0000028 ... Q8U002 23222135
    28 4v6u:AU (6.6) BS01 rna ? GO:0000028 ... Q8U0T4 23222135
    29 4v6u:AV (6.6) BS01 rna ? GO:0003735 ... Q8U442 23222135
    30 4v6u:AW (6.6) BS01 rna ? GO:0000028 ... Q8U474 23222135
    31 4v6u:AX (6.6) BS01 rna ? GO:0000028 ... Q8U159 23222135
    32 4v6u:AY (6.6) BS01 rna ? GO:0003735 ... Q8U443 23222135
    33 4v6u:B4 (6.6) BS01 rna ? GO:0001682 ... Q8U160 23222135
    34 4v6u:B5 (6.6) BS01 rna ? GO:0003723 ... Q8U2L5 23222135
    35 4v6u:B6 (6.6) BS01 rna ? GO:0003735 ... Q8U442 23222135
    36 4v6u:BA (6.6) BS01 rna ? GO:0000049 ... Q8TZJ9 23222135
    37 4v6u:BA (6.6) BS02 rna ? GO:0000049 ... Q8TZJ9 23222135
    38 4v6u:BB (6.6) BS01 rna ? GO:0002181 ... Q8U001 23222135
    39 4v6u:BC (6.6) BS01 rna ? GO:0003723 ... Q8TZZ8 23222135
    40 4v6u:BD (6.6) BS01 rna ? GO:0003723 ... Q8TZZ9 23222135
    41 4v6u:BE (6.6) BS01 rna ? GO:0000049 ... Q8U012 23222135
    42 4v6u:BE (6.6) BS02 rna ? GO:0000049 ... Q8U012 23222135
    43 4v6u:BF (6.6) BS01 rna ? GO:0002181 ... Q8U015 23222135
    44 4v6u:BG (6.6) BS01 rna ? GO:0001682 ... Q8U160 23222135
    45 4v6u:BH (6.6) BS01 rna ? GO:0003735 ... Q8TZK0 23222135
    46 4v6u:BI (6.6) BS01 rna ? GO:0003729 ... Q8U0E6 23222135
    47 4v6u:BJ (6.6) BS01 rna ? GO:0003735 ... Q8U009 23222135
    48 4v6u:BJ (6.6) BS02 rna ? GO:0003735 ... Q8U009 23222135
    49 4v6u:BK (6.6) BS01 rna ? GO:0003723 ... Q8U2L5 23222135
    50 4v6u:BL (6.6) BS01 rna ? GO:0003735 ... Q8U018 23222135
    51 4v6u:BM (6.6) BS01 rna ? GO:0002181 ... Q8U2F9 23222135
    52 4v6u:BN (6.6) BS01 rna ? GO:0000027 ... Q9UWP5 23222135
    53 4v6u:BN (6.6) BS02 rna ? GO:0000027 ... Q9UWP5 23222135
    54 4v6u:BN (6.6) BS03 rna ? GO:0000027 ... Q9UWP5 23222135
    55 4v6u:BO (6.6) BS01 rna ? GO:0000027 ... Q9HH80 23222135
    56 4v6u:BO (6.6) BS02 rna ? GO:0000027 ... Q9HH80 23222135
    57 4v6u:BP (6.6) BS01 rna ? GO:0003723 ... Q8U0E5 23222135
    58 4v6u:BQ (6.6) BS01 rna ? GO:0003723 ... Q8U016 23222135
    59 4v6u:BR (6.6) BS01 rna ? GO:0003735 ... Q8U217 23222135
    60 4v6u:BR (6.6) BS02 rna ? GO:0003735 ... Q8U217 23222135
    61 4v6u:BS (6.6) BS01 rna ? GO:0002181 ... Q8U003 23222135
    62 4v6u:BT (6.6) BS01 rna ? GO:0000027 ... Q8U000 23222135
    63 4v6u:BU (6.6) BS01 rna ? GO:0002181 ... Q8U010 23222135
    64 4v6u:BV (6.6) BS01 rna ? GO:0003735 ... Q8U158 23222135
    65 4v6u:BW (6.6) BS01 rna ? GO:0003735 ... Q8U005 23222135
    66 4v6u:BY (6.6) BS01 rna ? GO:0000463 ... Q9HH78 23222135
    67 4v6u:BY (6.6) BS02 rna ? GO:0000463 ... Q9HH78 23222135
    68 4v6u:BZ (6.6) BS01 rna ? GO:0003723 ... Q8U0M6 23222135
    69 4v6u:Ba (6.6) BS01 rna ? GO:0002181 ... Q8U3S7 23222135
    70 4v6u:Bb (6.6) BS01 rna ? GO:0003735 ... Q9HH82 23222135
    71 4v6u:Bc (6.6) BS01 rna ? GO:0003735 ... Q8TZV6 23222135
    72 4v6u:Bd (6.6) BS01 rna ? GO:0003735 ... Q8U2L3 23222135
    73 4v6u:Be (6.6) BS01 rna ? GO:0003735 ... Q8U0P5 23222135
    74 4v6u:Bf (6.6) BS01 rna ? GO:0003735 ... Q8U3S6 23222135
    75 4v6u:Bg (6.6) BS01 rna ? GO:0003735 ... Q8U0V6 23222135
    76 4v6u:Bi (6.6) BS01 rna ? GO:0003735 ... Q8TZI4 23222135
    77 4v6u:Bj (6.6) BS01 rna ? GO:0003735 ... Q8U475 23222135
    78 4v6u:Bj (6.6) BS02 rna ? GO:0003735 ... Q8U475 23222135
    79 4v6u:Bk (6.6) BS01 rna ? GO:0000027 ... Q8TZJ8 23222135
    80 4v6u:Bl (6.6) BS01 rna ? GO:0003735 ... Q8U3S9 23222135
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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