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BioLiP
Download all results in tab-seperated text for 139 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v6a:AB (3.1) BS01 rna ? GO:0003735 ... P80371 19696344
    2 4v6a:AC (3.1) BS01 rna ? GO:0003676 ... P80372 19696344
    3 4v6a:AD (3.1) BS01 rna ? GO:0003723 ... P80373 19696344
    4 4v6a:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 19696344
    5 4v6a:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 19696344
    6 4v6a:AG (3.1) BS01 rna ? GO:0000028 ... P17291 19696344
    7 4v6a:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    8 4v6a:AI (3.1) BS01 rna ? GO:0000049 ... P80374 19696344
    9 4v6a:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 19696344
    10 4v6a:AK (3.1) BS01 rna ? GO:0003735 ... P80376 19696344
    11 4v6a:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 19696344
    12 4v6a:AM (3.1) BS01 rna ? GO:0000049 ... P80377 19696344
    13 4v6a:AM (3.1) BS02 rna ? GO:0000049 ... P80377 19696344
    14 4v6a:AM (3.1) BS03 rna ? GO:0000049 ... P80377 19696344
    15 4v6a:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    16 4v6a:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 19696344
    17 4v6a:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 19696344
    18 4v6a:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 19696344
    19 4v6a:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    20 4v6a:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 19696344
    21 4v6a:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 19696344
    22 4v6a:AT (3.1) BS01 rna ? GO:0003723 ... P80380 19696344
    23 4v6a:AV (3.1) BS01 rna ? GO:0003746 ... Q76G20 19696344
    24 4v6a:AV (3.1) BS02 rna ? GO:0003746 ... Q76G20 19696344
    25 4v6a:AV (3.1) BS03 rna ? GO:0003746 ... Q76G20 19696344
    26 4v6a:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 19696344
    27 4v6a:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 19696344
    28 4v6a:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 19696344
    29 4v6a:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 19696344
    30 4v6a:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 19696344
    31 4v6a:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 19696344
    32 4v6a:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 19696344
    33 4v6a:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 19696344
    34 4v6a:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 19696344
    35 4v6a:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 19696344
    36 4v6a:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 19696344
    37 4v6a:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 19696344
    38 4v6a:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 19696344
    39 4v6a:BD (3.1) BS01 rna ? GO:0002181 ... P60405 19696344
    40 4v6a:BD (3.1) BS02 MG ? GO:0002181 ... P60405 19696344
    41 4v6a:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 19696344
    42 4v6a:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 19696344
    43 4v6a:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 19696344
    44 4v6a:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 19696344
    45 4v6a:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 19696344
    46 4v6a:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    47 4v6a:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 19696344
    48 4v6a:BN (3.1) BS01 rna ? GO:0003729 ... P60488 19696344
    49 4v6a:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 19696344
    50 4v6a:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 19696344
    51 4v6a:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 19696344
    52 4v6a:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 19696344
    53 4v6a:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 19696344
    54 4v6a:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 19696344
    55 4v6a:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 19696344
    56 4v6a:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 19696344
    57 4v6a:BT (3.1) BS01 rna ? GO:0003735 ... P60490 19696344
    58 4v6a:BT (3.1) BS02 rna ? GO:0003735 ... P60490 19696344
    59 4v6a:BT (3.1) BS03 MG ? GO:0003735 ... P60490 19696344
    60 4v6a:BU (3.1) BS01 rna ? GO:0000027 ... P60491 19696344
    61 4v6a:BU (3.1) BS02 MG ? GO:0000027 ... P60491 19696344
    62 4v6a:BV (3.1) BS01 rna ? GO:0003723 ... P60492 19696344
    63 4v6a:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 19696344
    64 4v6a:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 19696344
    65 4v6a:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 19696344
    66 4v6a:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 19696344
    67 4v6a:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 19696344
    68 4v6a:CB (3.1) BS01 rna ? GO:0003735 ... P80371 19696344
    69 4v6a:CC (3.1) BS01 rna ? GO:0003676 ... P80372 19696344
    70 4v6a:CD (3.1) BS01 rna ? GO:0003723 ... P80373 19696344
    71 4v6a:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 19696344
    72 4v6a:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 19696344
    73 4v6a:CG (3.1) BS01 rna ? GO:0000028 ... P17291 19696344
    74 4v6a:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    75 4v6a:CI (3.1) BS01 rna ? GO:0000049 ... P80374 19696344
    76 4v6a:CI (3.1) BS02 rna ? GO:0000049 ... P80374 19696344
    77 4v6a:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 19696344
    78 4v6a:CK (3.1) BS01 rna ? GO:0003735 ... P80376 19696344
    79 4v6a:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 19696344
    80 4v6a:CM (3.1) BS01 rna ? GO:0000049 ... P80377 19696344
    81 4v6a:CM (3.1) BS02 rna ? GO:0000049 ... P80377 19696344
    82 4v6a:CM (3.1) BS03 rna ? GO:0000049 ... P80377 19696344
    83 4v6a:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    84 4v6a:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 19696344
    85 4v6a:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 19696344
    86 4v6a:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 19696344
    87 4v6a:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    88 4v6a:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 19696344
    89 4v6a:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 19696344
    90 4v6a:CT (3.1) BS01 rna ? GO:0003723 ... P80380 19696344
    91 4v6a:CV (3.1) BS01 rna ? GO:0003746 ... Q76G20 19696344
    92 4v6a:CV (3.1) BS02 rna ? GO:0003746 ... Q76G20 19696344
    93 4v6a:CV (3.1) BS03 rna ? GO:0003746 ... Q76G20 19696344
    94 4v6a:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 19696344
    95 4v6a:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 19696344
    96 4v6a:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 19696344
    97 4v6a:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 19696344
    98 4v6a:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 19696344
    99 4v6a:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 19696344
    100 4v6a:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 19696344
    101 4v6a:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 19696344
    102 4v6a:D5 (3.1) BS02 ZN ? GO:0003735 ... P80339 19696344
    103 4v6a:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 19696344
    104 4v6a:D6 (3.1) BS02 MG ? GO:0000049 ... P35871 19696344
    105 4v6a:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 19696344
    106 4v6a:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 19696344
    107 4v6a:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 19696344
    108 4v6a:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 19696344
    109 4v6a:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 19696344
    110 4v6a:DD (3.1) BS01 rna ? GO:0002181 ... P60405 19696344
    111 4v6a:DD (3.1) BS02 rna ? GO:0002181 ... P60405 19696344
    112 4v6a:DD (3.1) BS03 MG ? GO:0002181 ... P60405 19696344
    113 4v6a:DD (3.1) BS04 MG ? GO:0002181 ... P60405 19696344
    114 4v6a:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 19696344
    115 4v6a:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 19696344
    116 4v6a:DF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 19696344
    117 4v6a:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 19696344
    118 4v6a:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 19696344
    119 4v6a:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 19696344
    120 4v6a:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    121 4v6a:DI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 19696344
    122 4v6a:DN (3.1) BS01 rna ? GO:0003729 ... P60488 19696344
    123 4v6a:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 19696344
    124 4v6a:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 19696344
    125 4v6a:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 19696344
    126 4v6a:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 19696344
    127 4v6a:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 19696344
    128 4v6a:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 19696344
    129 4v6a:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 19696344
    130 4v6a:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 19696344
    131 4v6a:DT (3.1) BS01 rna ? GO:0003735 ... P60490 19696344
    132 4v6a:DT (3.1) BS02 rna ? GO:0003735 ... P60490 19696344
    133 4v6a:DU (3.1) BS01 rna ? GO:0000027 ... P60491 19696344
    134 4v6a:DV (3.1) BS01 rna ? GO:0003723 ... P60492 19696344
    135 4v6a:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 19696344
    136 4v6a:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 19696344
    137 4v6a:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 19696344
    138 4v6a:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 19696344
    139 4v6a:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 19696344
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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