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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v65:AB (9.0) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    2 4v65:AC (9.0) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    3 4v65:AC (9.0) BS02 rna ? GO:0002181 ... P0A7R9 N/A
    4 4v65:AD (9.0) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    5 4v65:AD (9.0) BS02 rna ? GO:0000049 ... P0A7S3 N/A
    6 4v65:AF (9.0) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    7 4v65:AG (9.0) BS01 rna ? GO:0000028 ... P0AG59 N/A
    8 4v65:AH (9.0) BS01 rna ? GO:0003735 ... Q8X9M2 N/A
    9 4v65:AH (9.0) BS02 rna ? GO:0003735 ... Q8X9M2 N/A
    10 4v65:AI (9.0) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    11 4v65:AJ (9.0) BS01 rna ? GO:0000028 ... P0AG63 N/A
    12 4v65:AK (9.0) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    13 4v65:AL (9.0) BS01 rna ? GO:0000028 ... P0A7U3 N/A
    14 4v65:AN (9.0) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    15 4v65:AO (9.0) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    16 4v65:AQ (9.0) BS01 rna ? GO:0000028 ... P68679 N/A
    17 4v65:AQ (9.0) BS02 rna ? GO:0000028 ... P68679 N/A
    18 4v65:AR (9.0) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    19 4v65:AS (9.0) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    20 4v65:AT (9.0) BS01 rna ? GO:0002181 ... P02358 N/A
    21 4v65:AU (9.0) BS01 rna ? GO:0000028 ... P02359 N/A
    22 4v65:AU (9.0) BS02 rna ? GO:0000028 ... P02359 N/A
    23 4v65:AV (9.0) BS01 rna ? GO:0003735 ... Q3YWV3 N/A
    24 4v65:AW (9.0) BS01 rna ? GO:0000049 ... P0A7X3 N/A
    25 4v65:AX (9.0) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    26 4v65:B1 (9.0) BS01 rna ? GO:0001070 ... P60723 N/A
    27 4v65:B2 (9.0) BS01 rna ? GO:0000027 ... P62399 N/A
    28 4v65:B2 (9.0) BS02 rna ? GO:0000027 ... P62399 N/A
    29 4v65:B2 (9.0) BS03 rna ? GO:0000027 ... P62399 N/A
    30 4v65:B3 (9.0) BS01 rna ? GO:0000027 ... P0AG55 N/A
    31 4v65:B4 (9.0) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    32 4v65:B5 (9.0) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    33 4v65:B6 (9.0) BS01 rna ? GO:0002181 ... P0AA10 N/A
    34 4v65:BC (9.0) BS01 rna ? GO:0000027 ... P68919 N/A
    35 4v65:BC (9.0) BS02 rna ? GO:0000027 ... P68919 N/A
    36 4v65:BD (9.0) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    37 4v65:BD (9.0) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    38 4v65:BE (9.0) BS01 rna ? GO:0002181 ... P02413 N/A
    39 4v65:BF (9.0) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    40 4v65:BG (9.0) BS01 rna ? GO:0000027 ... P0AG44 N/A
    41 4v65:BH (9.0) BS01 rna ? GO:0002181 ... P0C018 N/A
    42 4v65:BH (9.0) BS02 rna ? GO:0002181 ... P0C018 N/A
    43 4v65:BI (9.0) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    44 4v65:BI (9.0) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    45 4v65:BJ (9.0) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    46 4v65:BK (9.0) BS01 rna ? GO:0002181 ... P0AG48 N/A
    47 4v65:BL (9.0) BS01 rna ? GO:0002181 ... P61175 N/A
    48 4v65:BM (9.0) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    49 4v65:BN (9.0) BS01 rna ? GO:0000027 ... P60422 N/A
    50 4v65:BO (9.0) BS01 rna ? GO:0000027 ... P60624 N/A
    51 4v65:BP (9.0) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    52 4v65:BQ (9.0) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    53 4v65:BR (9.0) BS01 rna ? GO:0000027 ... P0AG51 N/A
    54 4v65:BR (9.0) BS02 rna ? GO:0000027 ... P0AG51 N/A
    55 4v65:BS (9.0) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    56 4v65:BT (9.0) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    57 4v65:BU (9.0) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    58 4v65:BV (9.0) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    59 4v65:BW (9.0) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    60 4v65:BX (9.0) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    61 4v65:BY (9.0) BS01 rna ? GO:0000027 ... P60438 N/A
    62 4v65:BZ (9.0) BS01 rna ? GO:0000049 ... P35024 N/A
    63 4v65:BZ (9.0) BS02 rna ? GO:0000049 ... P35024 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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