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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v61:AB (9.4) BS01 rna ? GO:0003735 ... P08242 18042701
    2 4v61:AC (9.4) BS01 rna ? GO:0003723 ... P09595 18042701
    3 4v61:AD (9.4) BS01 rna ? GO:0003723 ... P13788 18042701
    4 4v61:AE (9.4) BS01 rna ? GO:0003723 ... Q9ST69 18042701
    5 4v61:AF (9.4) BS01 rna ? GO:0003735 ... P82403 18042701
    6 4v61:AG (9.4) BS01 rna ? GO:0000028 ... P82129 18042701
    7 4v61:AH (9.4) BS01 rna ? GO:0003735 ... P09597 18042701
    8 4v61:AI (9.4) BS01 rna ? GO:0000312 ... P82278 18042701
    9 4v61:AJ (9.4) BS01 rna N/A GO:0003723 ... N/A 18042701
    10 4v61:AK (9.4) BS01 rna ? GO:0003735 ... P06506 18042701
    11 4v61:AL (9.4) BS01 rna ? GO:0003735 ... P62128 18042701
    12 4v61:AM (9.4) BS01 rna ? GO:0003676 ... P82163 18042701
    13 4v61:AN (9.4) BS01 rna ? GO:0003735 ... P06507 18042701
    14 4v61:AO (9.4) BS01 rna ? GO:0003735 ... Q9M3I4 18042701
    15 4v61:AO (9.4) BS02 rna ? GO:0003735 ... Q9M3I4 18042701
    16 4v61:AP (9.4) BS01 rna ? GO:0003735 ... P28807 18042701
    17 4v61:AQ (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    18 4v61:AR (9.4) BS01 rna ? GO:0003735 ... Q9M3K7 18042701
    19 4v61:AS (9.4) BS01 rna ? GO:0000028 ... P06508 18042701
    20 4v61:AT (9.4) BS01 rna N/A GO:0003723 ... N/A 18042701
    21 4v61:AU (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    22 4v61:B2 (9.4) BS01 rna ? GO:0003735 ... P28804 18042701
    23 4v61:B2 (9.4) BS02 rna ? GO:0003735 ... P28804 18042701
    24 4v61:B3 (9.4) BS01 rna ? GO:0003735 ... P28805 18042701
    25 4v61:B4 (9.4) BS01 rna ? GO:0003735 ... P82244 18042701
    26 4v61:B5 (9.4) BS01 rna ? GO:0003735 ... P23326 18042701
    27 4v61:B6 (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    28 4v61:BD (9.4) BS01 rna ? GO:0003723 ... Q9LE95 18042701
    29 4v61:BE (9.4) BS01 rna ? GO:0002181 ... P06509 18042701
    30 4v61:BE (9.4) BS02 rna ? GO:0002181 ... P06509 18042701
    31 4v61:BF (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    32 4v61:BF (9.4) BS02 rna N/A GO:0003735 ... N/A 18042701
    33 4v61:BG (9.4) BS01 rna ? GO:0003735 ... O49937 18042701
    34 4v61:BH (9.4) BS01 rna ? GO:0003735 ... P82192 18042701
    35 4v61:BH (9.4) BS02 rna ? GO:0003735 ... P82192 18042701
    36 4v61:BI (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    37 4v61:BJ (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    38 4v61:BK (9.4) BS01 rna ? GO:0003735 ... P31164 18042701
    39 4v61:BL (9.4) BS01 rna ? GO:0003729 ... P12629 18042701
    40 4v61:BM (9.4) BS01 rna ? GO:0003735 ... P09596 18042701
    41 4v61:BN (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    42 4v61:BO (9.4) BS01 rna ? GO:0003735 ... P17353 18042701
    43 4v61:BO (9.4) BS02 rna ? GO:0003735 ... P17353 18042701
    44 4v61:BP (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    45 4v61:BP (9.4) BS02 rna N/A GO:0003735 ... N/A 18042701
    46 4v61:BQ (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    47 4v61:BQ (9.4) BS02 rna N/A GO:0003735 ... N/A 18042701
    48 4v61:BR (9.4) BS01 rna ? GO:0003735 ... P82413 18042701
    49 4v61:BR (9.4) BS02 rna ? GO:0003735 ... P82413 18042701
    50 4v61:BR (9.4) BS03 rna ? GO:0003735 ... P82413 18042701
    51 4v61:BS (9.4) BS01 rna ? GO:0000027 ... P28803 18042701
    52 4v61:BT (9.4) BS01 rna ? GO:0003723 ... P24613 18042701
    53 4v61:BU (9.4) BS01 rna ? GO:0003735 ... P09594 18042701
    54 4v61:BV (9.4) BS01 rna ? GO:0000027 ... Q9LWB5 18042701
    55 4v61:BW (9.4) BS01 rna ? GO:0003723 ... P27683 18042701
    56 4v61:BX (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    57 4v61:BY (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    58 4v61:BZ (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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