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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5v:AA (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    2 4v5v:AB (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    3 4v5v:AC (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    4 4v5v:AD (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    5 4v5v:AE (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    6 4v5v:AF (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    7 4v5v:AG (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    8 4v5v:AH (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    9 4v5v:AI (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    10 4v5v:AJ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    11 4v5v:AL (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    12 4v5v:AN (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    13 4v5v:AO (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    14 4v5v:AP (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    15 4v5v:AQ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    16 4v5v:AR (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    17 4v5v:AS (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    18 4v5v:AT (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    19 4v5v:AU (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    20 4v5v:AV (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    21 4v5v:BA (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    22 4v5v:BB (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    23 4v5v:BC (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    24 4v5v:BD (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    25 4v5v:BE (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    26 4v5v:BF (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    27 4v5v:BG (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    28 4v5v:BH (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    29 4v5v:BI (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    30 4v5v:BJ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    31 4v5v:BK (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    32 4v5v:BL (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    33 4v5v:BM (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    34 4v5v:BN (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    35 4v5v:BO (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    36 4v5v:BP (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    37 4v5v:BQ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    38 4v5v:BW (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    39 4v5v:BY (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    40 4v5v:BZ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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