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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5l:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21051640
    2 4v5l:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21051640
    3 4v5l:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21051640
    4 4v5l:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21051640
    5 4v5l:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21051640
    6 4v5l:AG (3.1) BS01 rna ? GO:0000028 ... P17291 21051640
    7 4v5l:AG (3.1) BS02 rna ? GO:0000028 ... P17291 21051640
    8 4v5l:AH (3.1) BS01 rna ? GO:0003735 ... P0DOY9 21051640
    9 4v5l:AI (3.1) BS01 rna ? GO:0000049 ... P62669 21051640
    10 4v5l:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21051640
    11 4v5l:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21051640
    12 4v5l:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21051640
    13 4v5l:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21051640
    14 4v5l:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21051640
    15 4v5l:AM (3.1) BS03 rna ? GO:0000049 ... P80377 21051640
    16 4v5l:AM (3.1) BS04 rna ? GO:0000049 ... P80377 21051640
    17 4v5l:AN (3.1) BS01 rna ? GO:0003735 ... P0DOY6 21051640
    18 4v5l:AN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 21051640
    19 4v5l:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21051640
    20 4v5l:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21051640
    21 4v5l:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21051640
    22 4v5l:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21051640
    23 4v5l:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21051640
    24 4v5l:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21051640
    25 4v5l:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21051640
    26 4v5l:AZ (3.1) BS01 rna ? GO:0003746 ... P60339 21051640
    27 4v5l:AZ (3.1) BS02 rna ? GO:0003746 ... P60339 21051640
    28 4v5l:AZ (3.1) BS03 rna ? GO:0003746 ... P60339 21051640
    29 4v5l:AZ (3.1) BS04 MG ? GO:0003746 ... P60339 21051640
    30 4v5l:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 21051640
    31 4v5l:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 21051640
    32 4v5l:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21051640
    33 4v5l:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21051640
    34 4v5l:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21051640
    35 4v5l:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 21051640
    36 4v5l:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 21051640
    37 4v5l:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 21051640
    38 4v5l:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21051640
    39 4v5l:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21051640
    40 4v5l:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21051640
    41 4v5l:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21051640
    42 4v5l:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21051640
    43 4v5l:BD (3.1) BS01 rna ? GO:0002181 ... P60405 21051640
    44 4v5l:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21051640
    45 4v5l:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21051640
    46 4v5l:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21051640
    47 4v5l:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21051640
    48 4v5l:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21051640
    49 4v5l:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 21051640
    50 4v5l:BJ (3.1) BS01 rna N/A N/A N/A 21051640
    51 4v5l:BK (3.1) BS01 rna N/A N/A N/A 21051640
    52 4v5l:BN (3.1) BS01 rna ? GO:0003729 ... P60488 21051640
    53 4v5l:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21051640
    54 4v5l:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21051640
    55 4v5l:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21051640
    56 4v5l:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 21051640
    57 4v5l:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 21051640
    58 4v5l:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21051640
    59 4v5l:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21051640
    60 4v5l:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21051640
    61 4v5l:BT (3.1) BS01 rna ? GO:0003735 ... P60490 21051640
    62 4v5l:BT (3.1) BS02 rna ? GO:0003735 ... P60490 21051640
    63 4v5l:BU (3.1) BS01 rna ? GO:0000027 ... P60491 21051640
    64 4v5l:BV (3.1) BS01 rna ? GO:0003723 ... P60492 21051640
    65 4v5l:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21051640
    66 4v5l:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21051640
    67 4v5l:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21051640
    68 4v5l:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21051640
    69 4v5l:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21051640
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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