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BioLiP
Download all results in tab-seperated text for 149 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5g:AB (3.6) BS01 rna ? GO:0003735 ... P80371 19833920
    2 4v5g:AC (3.6) BS01 rna ? GO:0003676 ... P80372 19833920
    3 4v5g:AD (3.6) BS01 rna ? GO:0003723 ... P80373 19833920
    4 4v5g:AD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833920
    5 4v5g:AE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833920
    6 4v5g:AF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833920
    7 4v5g:AG (3.6) BS01 rna ? GO:0000028 ... P17291 19833920
    8 4v5g:AG (3.6) BS02 rna ? GO:0000028 ... P17291 19833920
    9 4v5g:AH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    10 4v5g:AI (3.6) BS01 rna ? GO:0000049 ... P80374 19833920
    11 4v5g:AI (3.6) BS02 rna ? GO:0000049 ... P80374 19833920
    12 4v5g:AJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833920
    13 4v5g:AK (3.6) BS01 rna ? GO:0003735 ... P80376 19833920
    14 4v5g:AK (3.6) BS02 rna ? GO:0003735 ... P80376 19833920
    15 4v5g:AL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833920
    16 4v5g:AL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 19833920
    17 4v5g:AM (3.6) BS01 rna ? GO:0000049 ... P80377 19833920
    18 4v5g:AM (3.6) BS02 rna ? GO:0000049 ... P80377 19833920
    19 4v5g:AM (3.6) BS03 rna ? GO:0000049 ... P80377 19833920
    20 4v5g:AN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    21 4v5g:AN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833920
    22 4v5g:AO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833920
    23 4v5g:AP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833920
    24 4v5g:AQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    25 4v5g:AR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833920
    26 4v5g:AS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833920
    27 4v5g:AT (3.6) BS01 rna ? GO:0003723 ... P80380 19833920
    28 4v5g:AZ (3.6) BS01 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    29 4v5g:AZ (3.6) BS02 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    30 4v5g:AZ (3.6) BS03 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    31 4v5g:AZ (3.6) BS04 GDP 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    32 4v5g:AZ (3.6) BS05 KIR 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    33 4v5g:B0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833920
    34 4v5g:B0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833920
    35 4v5g:B0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833920
    36 4v5g:B1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833920
    37 4v5g:B2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833920
    38 4v5g:B3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833920
    39 4v5g:B5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833920
    40 4v5g:B6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833920
    41 4v5g:B7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833920
    42 4v5g:B8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833920
    43 4v5g:B9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833920
    44 4v5g:B9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833920
    45 4v5g:BC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833920
    46 4v5g:BC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833920
    47 4v5g:BD (3.6) BS01 rna ? GO:0002181 ... P60405 19833920
    48 4v5g:BE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833920
    49 4v5g:BF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833920
    50 4v5g:BG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833920
    51 4v5g:BG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833920
    52 4v5g:BG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833920
    53 4v5g:BH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    54 4v5g:BJ (3.6) BS01 rna N/A N/A N/A 19833920
    55 4v5g:BK (3.6) BS01 rna N/A N/A N/A 19833920
    56 4v5g:BN (3.6) BS01 rna ? GO:0003729 ... P60488 19833920
    57 4v5g:BO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833920
    58 4v5g:BP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833920
    59 4v5g:BQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833920
    60 4v5g:BQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833920
    61 4v5g:BR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833920
    62 4v5g:BS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833920
    63 4v5g:BS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833920
    64 4v5g:BT (3.6) BS01 rna ? GO:0003735 ... P60490 19833920
    65 4v5g:BT (3.6) BS02 rna ? GO:0003735 ... P60490 19833920
    66 4v5g:BU (3.6) BS01 rna ? GO:0000027 ... P60491 19833920
    67 4v5g:BV (3.6) BS01 rna ? GO:0003723 ... P60492 19833920
    68 4v5g:BW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833920
    69 4v5g:BX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 19833920
    70 4v5g:BY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833920
    71 4v5g:BZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833920
    72 4v5g:BZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833920
    73 4v5g:CB (3.6) BS01 rna ? GO:0003735 ... P80371 19833920
    74 4v5g:CC (3.6) BS01 rna ? GO:0003676 ... P80372 19833920
    75 4v5g:CD (3.6) BS01 rna ? GO:0003723 ... P80373 19833920
    76 4v5g:CD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833920
    77 4v5g:CE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833920
    78 4v5g:CF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833920
    79 4v5g:CG (3.6) BS01 rna ? GO:0000028 ... P17291 19833920
    80 4v5g:CG (3.6) BS02 rna ? GO:0000028 ... P17291 19833920
    81 4v5g:CH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    82 4v5g:CI (3.6) BS01 rna ? GO:0000049 ... P80374 19833920
    83 4v5g:CI (3.6) BS02 rna ? GO:0000049 ... P80374 19833920
    84 4v5g:CJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833920
    85 4v5g:CK (3.6) BS01 rna ? GO:0003735 ... P80376 19833920
    86 4v5g:CK (3.6) BS02 rna ? GO:0003735 ... P80376 19833920
    87 4v5g:CL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833920
    88 4v5g:CL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 19833920
    89 4v5g:CM (3.6) BS01 rna ? GO:0000049 ... P80377 19833920
    90 4v5g:CM (3.6) BS02 rna ? GO:0000049 ... P80377 19833920
    91 4v5g:CM (3.6) BS03 rna ? GO:0000049 ... P80377 19833920
    92 4v5g:CN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    93 4v5g:CN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833920
    94 4v5g:CO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833920
    95 4v5g:CO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 19833920
    96 4v5g:CP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833920
    97 4v5g:CQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    98 4v5g:CR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833920
    99 4v5g:CS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833920
    100 4v5g:CT (3.6) BS01 rna ? GO:0003723 ... P80380 19833920
    101 4v5g:CZ (3.6) BS01 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    102 4v5g:CZ (3.6) BS02 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    103 4v5g:CZ (3.6) BS03 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    104 4v5g:CZ (3.6) BS04 GDP 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    105 4v5g:CZ (3.6) BS05 KIR 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    106 4v5g:D0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833920
    107 4v5g:D0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833920
    108 4v5g:D0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833920
    109 4v5g:D1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833920
    110 4v5g:D1 (3.6) BS02 rna ? GO:0003735 ... P60494 19833920
    111 4v5g:D2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833920
    112 4v5g:D3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833920
    113 4v5g:D3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 19833920
    114 4v5g:D5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833920
    115 4v5g:D6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833920
    116 4v5g:D7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833920
    117 4v5g:D8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833920
    118 4v5g:D9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833920
    119 4v5g:D9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833920
    120 4v5g:DC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833920
    121 4v5g:DC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833920
    122 4v5g:DD (3.6) BS01 rna ? GO:0002181 ... P60405 19833920
    123 4v5g:DD (3.6) BS02 rna ? GO:0002181 ... P60405 19833920
    124 4v5g:DE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833920
    125 4v5g:DF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833920
    126 4v5g:DG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833920
    127 4v5g:DG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833920
    128 4v5g:DG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833920
    129 4v5g:DH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    130 4v5g:DJ (3.6) BS01 rna N/A N/A N/A 19833920
    131 4v5g:DK (3.6) BS01 rna N/A N/A N/A 19833920
    132 4v5g:DN (3.6) BS01 rna ? GO:0003729 ... P60488 19833920
    133 4v5g:DO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833920
    134 4v5g:DO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 19833920
    135 4v5g:DP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833920
    136 4v5g:DQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833920
    137 4v5g:DQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833920
    138 4v5g:DR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833920
    139 4v5g:DS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833920
    140 4v5g:DS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833920
    141 4v5g:DT (3.6) BS01 rna ? GO:0003735 ... P60490 19833920
    142 4v5g:DT (3.6) BS02 rna ? GO:0003735 ... P60490 19833920
    143 4v5g:DU (3.6) BS01 rna ? GO:0000027 ... P60491 19833920
    144 4v5g:DV (3.6) BS01 rna ? GO:0003723 ... P60492 19833920
    145 4v5g:DW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833920
    146 4v5g:DX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 19833920
    147 4v5g:DY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833920
    148 4v5g:DZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833920
    149 4v5g:DZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833920
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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