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BioLiP
Download all results in tab-seperated text for 120 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v54:AB (3.3) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    2 4v54:AC (3.3) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    3 4v54:AD (3.3) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    4 4v54:AE (3.3) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    5 4v54:AF (3.3) BS01 rna ? GO:0002181 ... P02358 17660832
    6 4v54:AG (3.3) BS01 rna ? GO:0000028 ... P02359 17660832
    7 4v54:AH (3.3) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    8 4v54:AI (3.3) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    9 4v54:AJ (3.3) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    10 4v54:AK (3.3) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    11 4v54:AL (3.3) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    12 4v54:AM (3.3) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    13 4v54:AN (3.3) BS01 rna ? GO:0000028 ... P0AG59 17660832
    14 4v54:AO (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    15 4v54:AO (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    16 4v54:AP (3.3) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    17 4v54:AQ (3.3) BS01 rna ? GO:0000028 ... P0AG63 17660832
    18 4v54:AR (3.3) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    19 4v54:AS (3.3) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    20 4v54:AT (3.3) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    21 4v54:AU (3.3) BS01 rna ? GO:0000028 ... P68679 17660832
    22 4v54:B0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    23 4v54:B1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    24 4v54:B2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    25 4v54:B3 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    26 4v54:B4 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    27 4v54:B4 (3.3) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    28 4v54:B6 (3.3) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    29 4v54:BC (3.3) BS01 rna ? GO:0000027 ... P60422 17660832
    30 4v54:BD (3.3) BS01 rna ? GO:0000027 ... P60438 17660832
    31 4v54:BE (3.3) BS01 rna ? GO:0001070 ... P60723 17660832
    32 4v54:BF (3.3) BS01 rna ? GO:0000027 ... P62399 17660832
    33 4v54:BF (3.3) BS02 rna ? GO:0000027 ... P62399 17660832
    34 4v54:BG (3.3) BS01 rna ? GO:0000027 ... P0AG55 17660832
    35 4v54:BH (3.3) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    36 4v54:BH (3.3) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    37 4v54:BI (3.3) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    38 4v54:BJ (3.3) BS01 rna ? GO:0002181 ... P0AA10 17660832
    39 4v54:BK (3.3) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    40 4v54:BK (3.3) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    41 4v54:BL (3.3) BS01 rna ? GO:0002181 ... P02413 17660832
    42 4v54:BM (3.3) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    43 4v54:BM (3.3) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    44 4v54:BN (3.3) BS01 rna ? GO:0000027 ... P0AG44 17660832
    45 4v54:BO (3.3) BS01 rna ? GO:0002181 ... P0C018 17660832
    46 4v54:BO (3.3) BS02 rna ? GO:0002181 ... P0C018 17660832
    47 4v54:BP (3.3) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    48 4v54:BP (3.3) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    49 4v54:BQ (3.3) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    50 4v54:BR (3.3) BS01 rna ? GO:0002181 ... P0AG48 17660832
    51 4v54:BS (3.3) BS01 rna ? GO:0002181 ... P61175 17660832
    52 4v54:BT (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    53 4v54:BU (3.3) BS01 rna ? GO:0000027 ... P60624 17660832
    54 4v54:BV (3.3) BS01 rna ? GO:0000027 ... P68919 17660832
    55 4v54:BV (3.3) BS02 rna ? GO:0000027 ... P68919 17660832
    56 4v54:BW (3.3) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    57 4v54:BW (3.3) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    58 4v54:BX (3.3) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    59 4v54:BY (3.3) BS01 rna ? GO:0000027 ... P0AG51 17660832
    60 4v54:BY (3.3) BS02 rna ? GO:0000027 ... P0AG51 17660832
    61 4v54:BZ (3.3) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    62 4v54:CB (3.3) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    63 4v54:CC (3.3) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    64 4v54:CD (3.3) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    65 4v54:CE (3.3) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    66 4v54:CF (3.3) BS01 rna ? GO:0002181 ... P02358 17660832
    67 4v54:CG (3.3) BS01 rna ? GO:0000028 ... P02359 17660832
    68 4v54:CH (3.3) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    69 4v54:CI (3.3) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    70 4v54:CJ (3.3) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    71 4v54:CK (3.3) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    72 4v54:CL (3.3) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    73 4v54:CM (3.3) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    74 4v54:CN (3.3) BS01 rna ? GO:0000028 ... P0AG59 17660832
    75 4v54:CO (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    76 4v54:CO (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    77 4v54:CP (3.3) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    78 4v54:CQ (3.3) BS01 rna ? GO:0000028 ... P0AG63 17660832
    79 4v54:CR (3.3) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    80 4v54:CS (3.3) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    81 4v54:CT (3.3) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    82 4v54:CU (3.3) BS01 rna ? GO:0000028 ... P68679 17660832
    83 4v54:D0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    84 4v54:D1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    85 4v54:D2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    86 4v54:D3 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    87 4v54:D4 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    88 4v54:D4 (3.3) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    89 4v54:D6 (3.3) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    90 4v54:DC (3.3) BS01 rna ? GO:0000027 ... P60422 17660832
    91 4v54:DD (3.3) BS01 rna ? GO:0000027 ... P60438 17660832
    92 4v54:DE (3.3) BS01 rna ? GO:0001070 ... P60723 17660832
    93 4v54:DF (3.3) BS01 rna ? GO:0000027 ... P62399 17660832
    94 4v54:DF (3.3) BS02 rna ? GO:0000027 ... P62399 17660832
    95 4v54:DG (3.3) BS01 rna ? GO:0000027 ... P0AG55 17660832
    96 4v54:DH (3.3) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    97 4v54:DI (3.3) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    98 4v54:DJ (3.3) BS01 rna ? GO:0002181 ... P0AA10 17660832
    99 4v54:DK (3.3) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    100 4v54:DK (3.3) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    101 4v54:DL (3.3) BS01 rna ? GO:0002181 ... P02413 17660832
    102 4v54:DM (3.3) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    103 4v54:DM (3.3) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    104 4v54:DN (3.3) BS01 rna ? GO:0000027 ... P0AG44 17660832
    105 4v54:DO (3.3) BS01 rna ? GO:0002181 ... P0C018 17660832
    106 4v54:DO (3.3) BS02 rna ? GO:0002181 ... P0C018 17660832
    107 4v54:DP (3.3) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    108 4v54:DP (3.3) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    109 4v54:DQ (3.3) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    110 4v54:DR (3.3) BS01 rna ? GO:0002181 ... P0AG48 17660832
    111 4v54:DS (3.3) BS01 rna ? GO:0002181 ... P61175 17660832
    112 4v54:DT (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    113 4v54:DU (3.3) BS01 rna ? GO:0000027 ... P60624 17660832
    114 4v54:DV (3.3) BS01 rna ? GO:0000027 ... P68919 17660832
    115 4v54:DW (3.3) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    116 4v54:DW (3.3) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    117 4v54:DX (3.3) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    118 4v54:DY (3.3) BS01 rna ? GO:0000027 ... P0AG51 17660832
    119 4v54:DY (3.3) BS02 rna ? GO:0000027 ... P0AG51 17660832
    120 4v54:DZ (3.3) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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