Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4y:AE (5.5) BS01 rna ? GO:0003735 ... P80371 17051149
    2 4v4y:AE (5.5) BS02 rna ? GO:0003735 ... P80371 17051149
    3 4v4y:AF (5.5) BS01 rna ? GO:0003676 ... P80372 17051149
    4 4v4y:AG (5.5) BS01 rna ? GO:0003723 ... P80373 17051149
    5 4v4y:AG (5.5) BS02 rna ? GO:0003723 ... P80373 17051149
    6 4v4y:AH (5.5) BS01 rna ? GO:0003723 ... Q5SHQ5 17051149
    7 4v4y:AI (5.5) BS01 rna ? GO:0003735 ... Q5SLP8 17051149
    8 4v4y:AJ (5.5) BS01 rna ? GO:0000028 ... P17291 17051149
    9 4v4y:AJ (5.5) BS02 rna ? GO:0000028 ... P17291 17051149
    10 4v4y:AK (5.5) BS01 rna ? GO:0003735 ... P0DOY9 17051149
    11 4v4y:AL (5.5) BS01 rna ? GO:0000049 ... P80374 17051149
    12 4v4y:AL (5.5) BS02 rna ? GO:0000049 ... P80374 17051149
    13 4v4y:AM (5.5) BS01 rna ? GO:0000049 ... Q5SHN7 17051149
    14 4v4y:AN (5.5) BS01 rna ? GO:0003735 ... P80376 17051149
    15 4v4y:AO (5.5) BS01 rna ? GO:0000049 ... Q5SHN3 17051149
    16 4v4y:AP (5.5) BS01 rna ? GO:0000049 ... P80377 17051149
    17 4v4y:AP (5.5) BS02 rna ? GO:0000049 ... P80377 17051149
    18 4v4y:AQ (5.5) BS01 rna ? GO:0003735 ... P0DOY6 17051149
    19 4v4y:AR (5.5) BS01 rna ? GO:0003735 ... Q5SJ76 17051149
    20 4v4y:AS (5.5) BS01 rna ? GO:0003735 ... Q5SJH3 17051149
    21 4v4y:AT (5.5) BS01 rna ? GO:0003735 ... P24321 17051149
    22 4v4y:AU (5.5) BS01 rna ? GO:0003735 ... P80382 17051149
    23 4v4y:AV (5.5) BS01 rna ? GO:0000028 ... Q5SHP2 17051149
    24 4v4y:AW (5.5) BS01 rna ? GO:0003723 ... P80380 17051149
    25 4v4y:B1 (5.5) BS01 rna ? GO:0003735 ... Q9LCY4 17051149
    26 4v4y:B2 (5.5) BS01 rna ? GO:0003735 ... Q5SHQ6 17051149
    27 4v4y:B3 (5.5) BS01 rna ? GO:0003735 ... Q5SJE1 17051149
    28 4v4y:B3 (5.5) BS02 rna ? GO:0003735 ... Q5SJE1 17051149
    29 4v4y:B4 (5.5) BS01 rna ? GO:0003735 ... P80339 17051149
    30 4v4y:B5 (5.5) BS01 rna ? GO:0000049 ... P35871 17051149
    31 4v4y:B6 (5.5) BS01 rna ? GO:0003735 ... P80340 17051149
    32 4v4y:B7 (5.5) BS01 rna ? GO:0003735 ... Q5SKU1 17051149
    33 4v4y:B8 (5.5) BS01 rna ? GO:0003735 ... Q5SHR2 17051149
    34 4v4y:BC (5.5) BS01 rna ? GO:0000049 ... P27150 17051149
    35 4v4y:BC (5.5) BS02 rna ? GO:0000049 ... P27150 17051149
    36 4v4y:BD (5.5) BS01 rna ? GO:0002181 ... P60405 17051149
    37 4v4y:BD (5.5) BS02 rna ? GO:0002181 ... P60405 17051149
    38 4v4y:BE (5.5) BS01 rna ? GO:0003735 ... Q5SHN8 17051149
    39 4v4y:BF (5.5) BS01 rna ? GO:0003735 ... Q5SHN9 17051149
    40 4v4y:BG (5.5) BS01 rna ? GO:0000049 ... Q5SHQ0 17051149
    41 4v4y:BG (5.5) BS02 rna ? GO:0000049 ... Q5SHQ0 17051149
    42 4v4y:BG (5.5) BS03 rna ? GO:0000049 ... Q5SHQ0 17051149
    43 4v4y:BH (5.5) BS01 rna ? GO:0002181 ... P0DOY8 17051149
    44 4v4y:BK (5.5) BS01 rna ? GO:0003735 ... P27151 17051149
    45 4v4y:BL (5.5) BS01 rna ? GO:0003735 ... Q5SLP6 17051149
    46 4v4y:BM (5.5) BS01 rna ? GO:0003729 ... P60488 17051149
    47 4v4y:BN (5.5) BS01 rna ? GO:0003735 ... P60558 17051149
    48 4v4y:BN (5.5) BS02 rna ? GO:0003735 ... P60558 17051149
    49 4v4y:BO (5.5) BS01 rna ? GO:0003735 ... Q5SHQ7 17051149
    50 4v4y:BP (5.5) BS01 rna ? GO:0000049 ... P60489 17051149
    51 4v4y:BQ (5.5) BS01 rna ? GO:0003735 ... Q9Z9H5 17051149
    52 4v4y:BR (5.5) BS01 rna ? GO:0003735 ... Q5SHQ4 17051149
    53 4v4y:BR (5.5) BS02 rna ? GO:0003735 ... Q5SHQ4 17051149
    54 4v4y:BS (5.5) BS01 rna ? GO:0003735 ... P60490 17051149
    55 4v4y:BS (5.5) BS02 rna ? GO:0003735 ... P60490 17051149
    56 4v4y:BT (5.5) BS01 rna ? GO:0000027 ... P60491 17051149
    57 4v4y:BU (5.5) BS01 rna ? GO:0003723 ... P60492 17051149
    58 4v4y:BV (5.5) BS01 rna ? GO:0003735 ... Q5SHP3 17051149
    59 4v4y:BW (5.5) BS01 rna ? GO:0000027 ... Q5SHP0 17051149
    60 4v4y:BX (5.5) BS01 rna ? GO:0003723 ... Q5SHP9 17051149
    61 4v4y:BY (5.5) BS01 rna ? GO:0003723 ... Q5SHZ1 17051149
    62 4v4y:BY (5.5) BS02 rna ? GO:0003723 ... Q5SHZ1 17051149
    63 4v4y:BZ (5.5) BS01 rna ? GO:0003735 ... P60493 17051149
    64 4v4y:BZ (5.5) BS02 rna ? GO:0003735 ... P60493 17051149
    65 4v4y:BZ (5.5) BS03 rna ? GO:0003735 ... P60493 17051149
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218