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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4v:AB (15.0) BS01 rna ? GO:0000028 ... P0A7V0 16713583
    2 4v4v:AC (15.0) BS01 rna ? GO:0003676 ... P0A7V3 16713583
    3 4v4v:AD (15.0) BS01 rna ? GO:0000028 ... P0A7V8 16713583
    4 4v4v:AE (15.0) BS01 rna ? GO:0003723 ... P0A7W1 16713583
    5 4v4v:AG (15.0) BS01 rna ? GO:0003723 ... P02359 16713583
    6 4v4v:AG (15.0) BS02 rna ? GO:0003723 ... P02359 16713583
    7 4v4v:AH (15.0) BS01 rna ? GO:0000028 ... P0A7W7 16713583
    8 4v4v:AI (15.0) BS01 rna ? GO:0000049 ... P0A7X3 16713583
    9 4v4v:AJ (15.0) BS01 rna ? GO:0000049 ... P0A7R5 16713583
    10 4v4v:AK (15.0) BS01 rna ? GO:0002181 ... P0A7R9 16713583
    11 4v4v:AL (15.0) BS01 rna ? GO:0003735 ... P0A7S3 16713583
    12 4v4v:AM (15.0) BS01 rna ? GO:0000049 ... P0A7S9 16713583
    13 4v4v:AN (15.0) BS01 rna ? GO:0003735 ... P0AG59 16713583
    14 4v4v:AO (15.0) BS01 rna ? GO:0000028 ... P0ADZ4 16713583
    15 4v4v:AO (15.0) BS02 rna ? GO:0000028 ... P0ADZ4 16713583
    16 4v4v:AP (15.0) BS01 rna ? GO:0000028 ... P0A7T3 16713583
    17 4v4v:AQ (15.0) BS01 rna ? GO:0000028 ... P0AG63 16713583
    18 4v4v:AS (15.0) BS01 rna ? GO:0000028 ... P0A7U3 16713583
    19 4v4v:AT (15.0) BS01 rna ? GO:0000028 ... P0A7U7 16713583
    20 4v4v:B1 (15.0) BS01 rna ? GO:0000027 ... P0A7N9 16713583
    21 4v4v:B2 (15.0) BS01 rna ? GO:0000027 ... P0A7L0 16713583
    22 4v4v:B3 (15.0) BS01 rna ? GO:0002181 ... P0A7K2 16713583
    23 4v4v:B5 (15.0) BS01 rna ? GO:0002181 ... P0A7K2 16713583
    24 4v4v:BA (15.0) BS01 rna ? GO:0003723 ... P60422 16713583
    25 4v4v:BA (15.0) BS02 rna ? GO:0003723 ... P60422 16713583
    26 4v4v:BB (15.0) BS01 rna ? GO:0000027 ... P60438 16713583
    27 4v4v:BC (15.0) BS01 rna ? GO:0001070 ... P60723 16713583
    28 4v4v:BD (15.0) BS01 rna ? GO:0000027 ... P62399 16713583
    29 4v4v:BE (15.0) BS01 rna ? GO:0000027 ... P0AG55 16713583
    30 4v4v:BF (15.0) BS01 rna ? GO:0002181 ... P0A7R1 16713583
    31 4v4v:BG (15.0) BS01 rna ? GO:0000027 ... P0A7J7 16713583
    32 4v4v:BH (15.0) BS01 rna ? GO:0002181 ... P0AA10 16713583
    33 4v4v:BI (15.0) BS01 rna ? GO:0002181 ... P0ADY3 16713583
    34 4v4v:BI (15.0) BS02 rna ? GO:0002181 ... P0ADY3 16713583
    35 4v4v:BJ (15.0) BS01 rna ? GO:0002181 ... P02413 16713583
    36 4v4v:BK (15.0) BS01 rna ? GO:0000027 ... P0ADY7 16713583
    37 4v4v:BK (15.0) BS02 rna ? GO:0000027 ... P0ADY7 16713583
    38 4v4v:BK (15.0) BS03 rna ? GO:0000027 ... P0ADY7 16713583
    39 4v4v:BL (15.0) BS01 rna ? GO:0000027 ... P0AG44 16713583
    40 4v4v:BL (15.0) BS02 peptide ? GO:0000027 ... P0AG44 16713583
    41 4v4v:BM (15.0) BS01 rna ? GO:0002181 ... P0C018 16713583
    42 4v4v:BM (15.0) BS02 rna ? GO:0002181 ... P0C018 16713583
    43 4v4v:BN (15.0) BS01 rna ? GO:0000027 ... P0A7K6 16713583
    44 4v4v:BN (15.0) BS02 rna ? GO:0000027 ... P0A7K6 16713583
    45 4v4v:BO (15.0) BS01 rna ? GO:0000027 ... P0A7L3 16713583
    46 4v4v:BQ (15.0) BS01 rna ? GO:0002181 ... P61175 16713583
    47 4v4v:BR (15.0) BS01 rna ? GO:0000027 ... P0ADZ0 16713583
    48 4v4v:BS (15.0) BS01 rna ? GO:0000027 ... P60624 16713583
    49 4v4v:BT (15.0) BS01 rna ? GO:0000027 ... P68919 16713583
    50 4v4v:BU (15.0) BS01 rna ? GO:0000027 ... P0A7L8 16713583
    51 4v4v:BU (15.0) BS02 rna ? GO:0000027 ... P0A7L8 16713583
    52 4v4v:BW (15.0) BS01 rna ? GO:0000027 ... P0A7M6 16713583
    53 4v4v:BX (15.0) BS01 rna ? GO:0000027 ... P0AG51 16713583
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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