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BioLiP
Download all results in tab-seperated text for 132 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4f:AA (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    2 4v4f:AA (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    3 4v4f:AA (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    4 4v4f:AA (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    5 4v4f:AB (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    6 4v4f:AB (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    7 4v4f:AB (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    8 4v4f:AB (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    9 4v4f:AC (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    10 4v4f:AC (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    11 4v4f:AC (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    12 4v4f:AC (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    13 4v4f:AD (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    14 4v4f:AD (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    15 4v4f:AD (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    16 4v4f:AD (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    17 4v4f:AE (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    18 4v4f:AE (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    19 4v4f:AE (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    20 4v4f:AE (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    21 4v4f:AF (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    22 4v4f:AF (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    23 4v4f:AF (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    24 4v4f:AF (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    25 4v4f:AG (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    26 4v4f:AG (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    27 4v4f:AG (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    28 4v4f:AG (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    29 4v4f:AH (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    30 4v4f:AH (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    31 4v4f:AH (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    32 4v4f:AH (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    33 4v4f:AI (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    34 4v4f:AI (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    35 4v4f:AI (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    36 4v4f:AI (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    37 4v4f:AJ (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    38 4v4f:AJ (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    39 4v4f:AJ (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    40 4v4f:AJ (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    41 4v4f:AK (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    42 4v4f:AK (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    43 4v4f:AK (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    44 4v4f:AK (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    45 4v4f:AL (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    46 4v4f:AL (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    47 4v4f:AM (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    48 4v4f:AM (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    49 4v4f:AN (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    50 4v4f:AN (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    51 4v4f:AO (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    52 4v4f:AO (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    53 4v4f:AP (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    54 4v4f:AP (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    55 4v4f:AQ (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    56 4v4f:AQ (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    57 4v4f:AR (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    58 4v4f:AR (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    59 4v4f:AS (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    60 4v4f:AS (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    61 4v4f:AT (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    62 4v4f:AT (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    63 4v4f:AU (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    64 4v4f:AU (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    65 4v4f:AV (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    66 4v4f:AV (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    67 4v4f:BA (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    68 4v4f:BA (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    69 4v4f:BA (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    70 4v4f:BA (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    71 4v4f:BB (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    72 4v4f:BB (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    73 4v4f:BB (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    74 4v4f:BB (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    75 4v4f:BC (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    76 4v4f:BC (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    77 4v4f:BC (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    78 4v4f:BC (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    79 4v4f:BD (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    80 4v4f:BD (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    81 4v4f:BD (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    82 4v4f:BD (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    83 4v4f:BE (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    84 4v4f:BE (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    85 4v4f:BE (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    86 4v4f:BE (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    87 4v4f:BF (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    88 4v4f:BF (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    89 4v4f:BF (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    90 4v4f:BF (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    91 4v4f:BG (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    92 4v4f:BG (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    93 4v4f:BG (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    94 4v4f:BG (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    95 4v4f:BH (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    96 4v4f:BH (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    97 4v4f:BH (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    98 4v4f:BH (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    99 4v4f:BI (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    100 4v4f:BI (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    101 4v4f:BI (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    102 4v4f:BI (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    103 4v4f:BJ (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    104 4v4f:BJ (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    105 4v4f:BJ (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    106 4v4f:BJ (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    107 4v4f:BK (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    108 4v4f:BK (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    109 4v4f:BK (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    110 4v4f:BK (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    111 4v4f:BL (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    112 4v4f:BL (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    113 4v4f:BM (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    114 4v4f:BM (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    115 4v4f:BN (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    116 4v4f:BN (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    117 4v4f:BO (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    118 4v4f:BO (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    119 4v4f:BP (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    120 4v4f:BP (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    121 4v4f:BQ (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    122 4v4f:BQ (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    123 4v4f:BR (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    124 4v4f:BR (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    125 4v4f:BS (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    126 4v4f:BS (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    127 4v4f:BT (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    128 4v4f:BT (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    129 4v4f:BU (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    130 4v4f:BU (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    131 4v4f:BV (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    132 4v4f:BV (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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