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BioLiP
Download all results in tab-seperated text for 97 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v3p:LA (34.0) BS01 rna ? GO:0003723 ... Q5I7L3 25376914
    2 4v3p:LB (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    3 4v3p:LB (34.0) BS02 rna N/A GO:0003723 ... N/A 25376914
    4 4v3p:LB (34.0) BS03 peptide N/A GO:0003723 ... N/A 25376914
    5 4v3p:LC (34.0) BS01 rna ? GO:0003723 ... Q7X744 25376914
    6 4v3p:LD (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    7 4v3p:LD (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    8 4v3p:LE (34.0) BS01 rna ? GO:0003723 ... Q5I7L2 25376914
    9 4v3p:LE (34.0) BS02 rna ? GO:0003723 ... Q5I7L2 25376914
    10 4v3p:LF (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    11 4v3p:LG (34.0) BS01 rna ? GO:0003735 ... Q5I7L4 25376914
    12 4v3p:LH (34.0) BS01 rna N/A GO:0042254 ... N/A 25376914
    13 4v3p:LH (34.0) BS02 rna N/A GO:0042254 ... N/A 25376914
    14 4v3p:LH (34.0) BS03 peptide N/A GO:0042254 ... N/A 25376914
    15 4v3p:LI (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    16 4v3p:LI (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    17 4v3p:LJ (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    18 4v3p:LK (34.0) BS01 rna ? GO:0003729 ... Q5I7L1 25376914
    19 4v3p:LL (34.0) BS01 rna N/A N/A N/A 25376914
    20 4v3p:LL (34.0) BS02 rna N/A N/A N/A 25376914
    21 4v3p:LM (34.0) BS01 rna ? GO:0003735 ... Q5I7K4 25376914
    22 4v3p:LN (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    23 4v3p:LO (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    24 4v3p:LP (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    25 4v3p:LP (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    26 4v3p:LQ (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    27 4v3p:LQ (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    28 4v3p:LR (34.0) BS01 rna ? GO:0003735 ... Q5I7L0 25376914
    29 4v3p:LS (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    30 4v3p:LS (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    31 4v3p:LT (34.0) BS01 rna ? GO:0003723 ... Q7XY20 25376914
    32 4v3p:LT (34.0) BS02 rna ? GO:0003723 ... Q7XY20 25376914
    33 4v3p:LU (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    34 4v3p:LU (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    35 4v3p:LU (34.0) BS03 peptide N/A GO:0003735 ... N/A 25376914
    36 4v3p:LV (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    37 4v3p:LV (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    38 4v3p:LW (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    39 4v3p:LX (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    40 4v3p:LX (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    41 4v3p:LY (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    42 4v3p:LY (34.0) BS02 rna N/A GO:0003723 ... N/A 25376914
    43 4v3p:LZ (34.0) BS01 rna N/A N/A N/A 25376914
    44 4v3p:LZ (34.0) BS02 rna N/A N/A N/A 25376914
    45 4v3p:La (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    46 4v3p:Lb (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    47 4v3p:Lc (34.0) BS01 rna ? GO:0000463 ... Q8L805 25376914
    48 4v3p:Lc (34.0) BS02 rna ? GO:0000463 ... Q8L805 25376914
    49 4v3p:Le (34.0) BS01 rna ? GO:0000463 ... Q5I7K6 25376914
    50 4v3p:Lf (34.0) BS01 rna ? GO:0003723 ... Q5I7K9 25376914
    51 4v3p:Lf (34.0) BS02 rna ? GO:0003723 ... Q5I7K9 25376914
    52 4v3p:Lg (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    53 4v3p:Lh (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    54 4v3p:Li (34.0) BS01 rna ? GO:0003735 ... Q5I7K8 25376914
    55 4v3p:Lj (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    56 4v3p:Lk (34.0) BS01 rna ? GO:0003735 ... Q5I7L5 25376914
    57 4v3p:Ll (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    58 4v3p:Ll (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    59 4v3p:Lm (34.0) BS01 rna ? GO:0003735 ... D8L9P6 25376914
    60 4v3p:Lm (34.0) BS02 rna ? GO:0003735 ... D8L9P6 25376914
    61 4v3p:Ln (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    62 4v3p:Lo (34.0) BS01 rna ? GO:0003735 ... Q5I7K7 25376914
    63 4v3p:Lo (34.0) BS02 rna ? GO:0003735 ... Q5I7K7 25376914
    64 4v3p:Lp (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    65 4v3p:Lr (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    66 4v3p:Ls (34.0) BS01 rna N/A N/A N/A 25376914
    67 4v3p:SA (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    68 4v3p:SB (34.0) BS01 rna ? GO:0003723 ... Q8L804 25376914
    69 4v3p:SC (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    70 4v3p:SC (34.0) BS02 rna N/A GO:0003723 ... N/A 25376914
    71 4v3p:SD (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    72 4v3p:SE (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    73 4v3p:SF (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    74 4v3p:SG (34.0) BS01 rna N/A N/A N/A 25376914
    75 4v3p:SH (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    76 4v3p:SI (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    77 4v3p:SJ (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    78 4v3p:SK (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    79 4v3p:SL (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    80 4v3p:SM (34.0) BS01 rna N/A GO:0003676 ... N/A 25376914
    81 4v3p:SM (34.0) BS02 rna N/A GO:0003676 ... N/A 25376914
    82 4v3p:SN (34.0) BS01 rna ? GO:0003735 ... Q5I7K3 25376914
    83 4v3p:SO (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    84 4v3p:SO (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    85 4v3p:SP (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    86 4v3p:SP (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    87 4v3p:SQ (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    88 4v3p:SR (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    89 4v3p:SS (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    90 4v3p:ST (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    91 4v3p:ST (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    92 4v3p:SU (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    93 4v3p:SV (34.0) BS01 rna N/A N/A N/A 25376914
    94 4v3p:SW (34.0) BS01 rna N/A N/A N/A 25376914
    95 4v3p:SX (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    96 4v3p:SZ (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    97 4v3p:Sa (34.0) BS01 rna ? GO:0007165 ... Q8LNY6 25376914
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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