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BioLiP
Download all results in tab-seperated text for 103 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4uje:BA (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    2 4uje:BB (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    3 4uje:BC (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    4 4uje:BC (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    5 4uje:BD (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    6 4uje:BD (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    7 4uje:BE (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    8 4uje:BF (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    9 4uje:BF (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    10 4uje:BF (6.9) BS03 rna N/A GO:0003723 ... N/A 24995983
    11 4uje:BG (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    12 4uje:BH (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    13 4uje:BI (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    14 4uje:BI (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    15 4uje:BJ (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    16 4uje:BK (6.9) BS01 rna N/A N/A N/A 24995983
    17 4uje:BL (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    18 4uje:BM (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    19 4uje:BN (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    20 4uje:BN (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    21 4uje:BO (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    22 4uje:BP (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    23 4uje:BQ (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    24 4uje:BR (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    25 4uje:BS (6.9) BS01 rna N/A GO:0003676 ... N/A 24995983
    26 4uje:BS (6.9) BS02 rna N/A GO:0003676 ... N/A 24995983
    27 4uje:BT (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    28 4uje:BU (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    29 4uje:BW (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    30 4uje:BX (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    31 4uje:BY (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    32 4uje:BZ (6.9) BS01 rna N/A N/A N/A 24995983
    33 4uje:Ba (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    34 4uje:Ba (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    35 4uje:Bb (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    36 4uje:Bc (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    37 4uje:Bd (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    38 4uje:Be (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    39 4uje:Bf (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    40 4uje:Bg (6.9) BS01 rna N/A GO:0043022 ... N/A 24995983
    41 4uje:CA (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    42 4uje:CB (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    43 4uje:CC (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    44 4uje:CC (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    45 4uje:CD (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    46 4uje:CD (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    47 4uje:CE (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    48 4uje:CF (6.9) BS01 rna N/A GO:0000463 ... N/A 24995983
    49 4uje:CF (6.9) BS02 rna N/A GO:0000463 ... N/A 24995983
    50 4uje:CG (6.9) BS01 rna N/A GO:0042254 ... N/A 24995983
    51 4uje:CG (6.9) BS02 rna N/A GO:0042254 ... N/A 24995983
    52 4uje:CH (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    53 4uje:CI (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    54 4uje:CI (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    55 4uje:CJ (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    56 4uje:CJ (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    57 4uje:CJ (6.9) BS03 rna N/A GO:0003735 ... N/A 24995983
    58 4uje:CL (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    59 4uje:CL (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    60 4uje:CM (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    61 4uje:CN (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    62 4uje:CN (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    63 4uje:CO (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    64 4uje:CP (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    65 4uje:CP (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    66 4uje:CQ (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    67 4uje:CR (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    68 4uje:CR (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    69 4uje:CS (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    70 4uje:CS (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    71 4uje:CT (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    72 4uje:CT (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    73 4uje:CU (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    74 4uje:CV (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    75 4uje:CW (6.9) BS01 rna N/A N/A N/A 24995983
    76 4uje:CX (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    77 4uje:CX (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    78 4uje:CY (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    79 4uje:CY (6.9) BS02 rna N/A GO:0003723 ... N/A 24995983
    80 4uje:CZ (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    81 4uje:Ca (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    82 4uje:Cb (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    83 4uje:Cc (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    84 4uje:Cd (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    85 4uje:Ce (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    86 4uje:Cf (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    87 4uje:Cg (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    88 4uje:Ch (6.9) BS01 rna N/A GO:0000463 ... N/A 24995983
    89 4uje:Ch (6.9) BS02 rna N/A GO:0000463 ... N/A 24995983
    90 4uje:Ci (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    91 4uje:Cj (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    92 4uje:Cj (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    93 4uje:Ck (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    94 4uje:Cl (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    95 4uje:Cl (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    96 4uje:Cm (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    97 4uje:Co (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    98 4uje:Co (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    99 4uje:Co (6.9) BS03 rna N/A GO:0003735 ... N/A 24995983
    100 4uje:Cp (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    101 4uje:Cp (6.9) BS02 rna N/A GO:0003735 ... N/A 24995983
    102 4uje:Ct (6.9) BS01 rna N/A GO:0003735 ... N/A 24995983
    103 4uje:Cu (6.9) BS01 rna N/A GO:0003723 ... N/A 24995983
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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