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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4u67:1 (3.65) BS01 rna ? GO:0000049 ... Q9RSS4 28689968
    2 4u67:2 (3.65) BS01 rna ? GO:0003735 ... Q9RSH2 28689968
    3 4u67:3 (3.65) BS01 rna ? GO:0003735 ... Q9RSW6 28689968
    4 4u67:A (3.65) BS01 rna ? GO:0002181 ... Q9RXJ9 28689968
    5 4u67:B (3.65) BS01 rna ? GO:0003735 ... Q9RXK2 28689968
    6 4u67:C (3.65) BS01 rna ? GO:0003735 ... Q9RXK1 28689968
    7 4u67:D (3.65) BS01 rna ? GO:0000049 ... Q9RXJ0 28689968
    8 4u67:D (3.65) BS02 rna ? GO:0000049 ... Q9RXJ0 28689968
    9 4u67:E (3.65) BS01 rna ? GO:0002181 ... Q9RSL3 28689968
    10 4u67:G (3.65) BS01 rna ? GO:0003729 ... Q9RXY1 28689968
    11 4u67:H (3.65) BS01 rna ? GO:0003735 ... Q9RXJ2 28689968
    12 4u67:I (3.65) BS01 rna ? GO:0003735 ... Q9RSK9 28689968
    13 4u67:J (3.65) BS01 rna ? GO:0000049 ... Q9RXJ5 28689968
    14 4u67:J (3.65) BS02 rna ? GO:0000049 ... Q9RXJ5 28689968
    15 4u67:K (3.65) BS01 rna ? GO:0003735 ... Q9RSJ5 28689968
    16 4u67:L (3.65) BS01 rna ? GO:0003735 ... Q9RSL2 28689968
    17 4u67:L (3.65) BS02 rna ? GO:0003735 ... Q9RSL2 28689968
    18 4u67:M (3.65) BS01 rna ? GO:0003735 ... Q9RWB4 28689968
    19 4u67:N (3.65) BS01 rna ? GO:0000027 ... Q9RSW7 28689968
    20 4u67:O (3.65) BS01 rna ? GO:0003723 ... Q9RY64 28689968
    21 4u67:P (3.65) BS01 rna ? GO:0003735 ... Q9RXJ7 28689968
    22 4u67:Q (3.65) BS01 rna ? GO:0000027 ... Q9RXK0 28689968
    23 4u67:R (3.65) BS01 rna ? GO:0003723 ... Q9RXJ1 28689968
    24 4u67:S (3.65) BS01 rna ? GO:0000049 ... Q9RX88 28689968
    25 4u67:S (3.65) BS02 rna ? GO:0000049 ... Q9RX88 28689968
    26 4u67:T (3.65) BS01 rna ? GO:0000049 ... Q9RY65 28689968
    27 4u67:U (3.65) BS01 rna ? GO:0003735 ... Q9RRG8 28689968
    28 4u67:V (3.65) BS01 rna ? GO:0003735 ... Q9RXJ4 28689968
    29 4u67:W (3.65) BS01 rna ? GO:0003735 ... Q9RSL0 28689968
    30 4u67:W (3.65) BS02 rna ? GO:0003735 ... Q9RSL0 28689968
    31 4u67:Z (3.65) BS01 rna ? GO:0003735 ... P49228 28689968
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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