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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 271 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4u4r:C0 (2.801) BS01 rna ? GO:0000054 ... Q08745 25209664
    2 4u4r:C1 (2.801) BS01 rna ? GO:0000028 ... P0CX47 25209664
    3 4u4r:C2 (2.801) BS01 rna ? GO:0000028 ... P48589 25209664
    4 4u4r:C3 (2.801) BS01 rna ? GO:0000462 ... P05756 25209664
    5 4u4r:C3 (2.801) BS02 rna ? GO:0000462 ... P05756 25209664
    6 4u4r:C3 (2.801) BS03 OHX ? GO:0000462 ... P05756 25209664
    7 4u4r:C4 (2.801) BS01 rna ? GO:0000028 ... P06367 25209664
    8 4u4r:C5 (2.801) BS01 rna ? GO:0000028 ... Q01855 25209664
    9 4u4r:C5 (2.801) BS02 rna ? GO:0000028 ... Q01855 25209664
    10 4u4r:C5 (2.801) BS03 OHX ? GO:0000028 ... Q01855 25209664
    11 4u4r:C6 (2.801) BS01 rna ? GO:0000462 ... P0CX51 25209664
    12 4u4r:C7 (2.801) BS01 rna ? GO:0000028 ... P02407 25209664
    13 4u4r:C8 (2.801) BS01 rna ? GO:0000054 ... P0CX55 25209664
    14 4u4r:C8 (2.801) BS02 MG ? GO:0000054 ... P0CX55 25209664
    15 4u4r:C8 (2.801) BS03 MG ? GO:0000054 ... P0CX55 25209664
    16 4u4r:C8 (2.801) BS04 OHX ? GO:0000054 ... P0CX55 25209664
    17 4u4r:C9 (2.801) BS01 rna ? GO:0000028 ... P07280 25209664
    18 4u4r:D0 (2.801) BS01 rna ? GO:0000462 ... P38701 25209664
    19 4u4r:D2 (2.801) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    20 4u4r:D3 (2.801) BS01 rna ? GO:0000462 ... P0CX29 25209664
    21 4u4r:D4 (2.801) BS01 rna ? GO:0000462 ... P0CX31 25209664
    22 4u4r:D5 (2.801) BS01 rna ? GO:0002181 ... Q3E792 25209664
    23 4u4r:D6 (2.801) BS01 rna ? GO:0003735 ... P39939 25209664
    24 4u4r:D6 (2.801) BS02 ZN ? GO:0003735 ... P39939 25209664
    25 4u4r:D7 (2.801) BS01 rna ? GO:0000028 ... P35997 25209664
    26 4u4r:D8 (2.801) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    27 4u4r:D9 (2.801) BS01 rna ? GO:0002181 ... P41057 25209664
    28 4u4r:D9 (2.801) BS02 ZN ? GO:0002181 ... P41057 25209664
    29 4u4r:D9 (2.801) BS03 OHX ? GO:0002181 ... P41057 25209664
    30 4u4r:E0 (2.801) BS01 rna ? GO:0002181 ... P0CX33 25209664
    31 4u4r:E1 (2.801) BS01 rna ? GO:0003735 ... P05759 25209664
    32 4u4r:E1 (2.801) BS02 ZN ? GO:0003735 ... P05759 25209664
    33 4u4r:L2 (2.801) BS01 rna ? GO:0002181 ... P0CX45 25209664
    34 4u4r:L2 (2.801) BS02 rna ? GO:0002181 ... P0CX45 25209664
    35 4u4r:L2 (2.801) BS03 MG ? GO:0002181 ... P0CX45 25209664
    36 4u4r:L3 (2.801) BS01 rna ? GO:0000027 ... P14126 25209664
    37 4u4r:L3 (2.801) BS02 OHX ? GO:0000027 ... P14126 25209664
    38 4u4r:L3 (2.801) BS03 OHX ? GO:0000027 ... P14126 25209664
    39 4u4r:L4 (2.801) BS01 rna ? GO:0002181 ... P10664 25209664
    40 4u4r:L4 (2.801) BS02 rna ? GO:0002181 ... P10664 25209664
    41 4u4r:L4 (2.801) BS03 OHX ? GO:0002181 ... P10664 25209664
    42 4u4r:L5 (2.801) BS01 rna ? GO:0000027 ... P26321 25209664
    43 4u4r:L5 (2.801) BS02 rna ? GO:0000027 ... P26321 25209664
    44 4u4r:L6 (2.801) BS01 rna ? GO:0000027 ... Q02326 25209664
    45 4u4r:L7 (2.801) BS01 rna ? GO:0000463 ... P05737 25209664
    46 4u4r:L7 (2.801) BS02 rna ? GO:0000463 ... P05737 25209664
    47 4u4r:L7 (2.801) BS03 OHX ? GO:0000463 ... P05737 25209664
    48 4u4r:L8 (2.801) BS01 rna ? GO:0000470 ... P17076 25209664
    49 4u4r:L8 (2.801) BS02 rna ? GO:0000470 ... P17076 25209664
    50 4u4r:L9 (2.801) BS01 rna ? GO:0002181 ... P05738 25209664
    51 4u4r:M0 (2.801) BS01 rna ? GO:0000027 ... P41805 25209664
    52 4u4r:M0 (2.801) BS02 rna ? GO:0000027 ... P41805 25209664
    53 4u4r:M0 (2.801) BS03 MG ? GO:0000027 ... P41805 25209664
    54 4u4r:M0 (2.801) BS04 OHX ? GO:0000027 ... P41805 25209664
    55 4u4r:M1 (2.801) BS01 rna ? GO:0000027 ... Q3E757 25209664
    56 4u4r:M1 (2.801) BS02 rna ? GO:0000027 ... Q3E757 25209664
    57 4u4r:M3 (2.801) BS01 rna ? GO:0002181 ... Q12690 25209664
    58 4u4r:M3 (2.801) BS02 rna ? GO:0002181 ... Q12690 25209664
    59 4u4r:M3 (2.801) BS03 MG ? GO:0002181 ... Q12690 25209664
    60 4u4r:M4 (2.801) BS01 rna ? GO:0000027 ... P36105 25209664
    61 4u4r:M5 (2.801) BS01 rna ? GO:0002181 ... P05748 25209664
    62 4u4r:M5 (2.801) BS02 rna ? GO:0002181 ... P05748 25209664
    63 4u4r:M5 (2.801) BS03 OHX ? GO:0002181 ... P05748 25209664
    64 4u4r:M6 (2.801) BS01 rna ? GO:0000470 ... P26784 25209664
    65 4u4r:M7 (2.801) BS01 rna ? GO:0000448 ... P05740 25209664
    66 4u4r:M7 (2.801) BS02 rna ? GO:0000448 ... P05740 25209664
    67 4u4r:M7 (2.801) BS03 MG ? GO:0000448 ... P05740 25209664
    68 4u4r:M7 (2.801) BS04 OHX ? GO:0000448 ... P05740 25209664
    69 4u4r:M8 (2.801) BS01 rna ? GO:0002181 ... P0CX49 25209664
    70 4u4r:M9 (2.801) BS01 rna ? GO:0002181 ... P0CX82 25209664
    71 4u4r:M9 (2.801) BS02 rna ? GO:0002181 ... P0CX82 25209664
    72 4u4r:M9 (2.801) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    73 4u4r:N0 (2.801) BS01 rna ? GO:0002181 ... P0CX23 25209664
    74 4u4r:N0 (2.801) BS02 rna ? GO:0002181 ... P0CX23 25209664
    75 4u4r:N1 (2.801) BS01 rna ? GO:0002181 ... Q02753 25209664
    76 4u4r:N1 (2.801) BS02 rna ? GO:0002181 ... Q02753 25209664
    77 4u4r:N1 (2.801) BS03 OHX ? GO:0002181 ... Q02753 25209664
    78 4u4r:N2 (2.801) BS01 rna ? GO:0002181 ... P05749 25209664
    79 4u4r:N3 (2.801) BS01 rna ? GO:0002181 ... P0CX41 25209664
    80 4u4r:N3 (2.801) BS02 rna ? GO:0002181 ... P0CX41 25209664
    81 4u4r:N4 (2.801) BS01 rna ? GO:0002181 ... P04449 25209664
    82 4u4r:N4 (2.801) BS02 rna ? GO:0002181 ... P04449 25209664
    83 4u4r:N5 (2.801) BS01 rna ? GO:0000027 ... P04456 25209664
    84 4u4r:N5 (2.801) BS02 rna ? GO:0000027 ... P04456 25209664
    85 4u4r:N6 (2.801) BS01 rna ? GO:0002181 ... P05743 25209664
    86 4u4r:N6 (2.801) BS02 rna ? GO:0002181 ... P05743 25209664
    87 4u4r:N7 (2.801) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    88 4u4r:N8 (2.801) BS01 rna ? GO:0002181 ... P02406 25209664
    89 4u4r:N8 (2.801) BS02 MG ? GO:0002181 ... P02406 25209664
    90 4u4r:N8 (2.801) BS03 MG ? GO:0002181 ... P02406 25209664
    91 4u4r:N9 (2.801) BS01 rna ? GO:0002181 ... P05747 25209664
    92 4u4r:N9 (2.801) BS02 OHX ? GO:0002181 ... P05747 25209664
    93 4u4r:O0 (2.801) BS01 rna ? GO:0002181 ... P14120 25209664
    94 4u4r:O1 (2.801) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    95 4u4r:O2 (2.801) BS01 rna ? GO:0002181 ... P38061 25209664
    96 4u4r:O3 (2.801) BS01 rna ? GO:0000027 ... P05744 25209664
    97 4u4r:O3 (2.801) BS02 OHX ? GO:0000027 ... P05744 25209664
    98 4u4r:O4 (2.801) BS01 rna ? GO:0002181 ... P87262 25209664
    99 4u4r:O5 (2.801) BS01 rna ? GO:0000463 ... P0CX84 25209664
    100 4u4r:O5 (2.801) BS02 rna ? GO:0000463 ... P0CX84 25209664
    101 4u4r:O6 (2.801) BS01 rna ? GO:0002181 ... P05745 25209664
    102 4u4r:O7 (2.801) BS01 rna ? GO:0000448 ... P49166 25209664
    103 4u4r:O7 (2.801) BS02 rna ? GO:0000448 ... P49166 25209664
    104 4u4r:O7 (2.801) BS03 OHX ? GO:0000448 ... P49166 25209664
    105 4u4r:O7 (2.801) BS04 ZN ? GO:0000448 ... P49166 25209664
    106 4u4r:O7 (2.801) BS05 OHX ? GO:0000448 ... P49166 25209664
    107 4u4r:O7 (2.801) BS06 OHX ? GO:0000448 ... P49166 25209664
    108 4u4r:O8 (2.801) BS01 rna ? GO:0002181 ... P49167 25209664
    109 4u4r:O9 (2.801) BS01 rna ? GO:0002181 ... P04650 25209664
    110 4u4r:O9 (2.801) BS02 rna ? GO:0002181 ... P04650 25209664
    111 4u4r:O9 (2.801) BS03 OHX ? GO:0002181 ... P04650 25209664
    112 4u4r:Q0 (2.801) BS01 rna ? GO:0003735 ... P0CH08 25209664
    113 4u4r:Q0 (2.801) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    114 4u4r:Q2 (2.801) BS01 rna ? GO:0002181 ... P0CX27 25209664
    115 4u4r:Q2 (2.801) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    116 4u4r:Q2 (2.801) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    117 4u4r:Q3 (2.801) BS01 rna ? GO:0002181 ... P0CX25 25209664
    118 4u4r:Q3 (2.801) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    119 4u4r:S0 (2.801) BS01 rna ? GO:0000028 ... P32905 25209664
    120 4u4r:S1 (2.801) BS01 rna ? GO:0000462 ... P33442 25209664
    121 4u4r:S2 (2.801) BS01 rna ? GO:0000054 ... P25443 25209664
    122 4u4r:S3 (2.801) BS01 rna ? GO:0000054 ... P05750 25209664
    123 4u4r:S4 (2.801) BS01 rna ? GO:0002181 ... P0CX35 25209664
    124 4u4r:S4 (2.801) BS02 MG ? GO:0002181 ... P0CX35 25209664
    125 4u4r:S5 (2.801) BS01 rna ? GO:0000028 ... P26783 25209664
    126 4u4r:S6 (2.801) BS01 rna ? GO:0000462 ... P0CX37 25209664
    127 4u4r:S7 (2.801) BS01 rna ? GO:0002181 ... P26786 25209664
    128 4u4r:S8 (2.801) BS01 rna ? GO:0000462 ... P0CX39 25209664
    129 4u4r:S8 (2.801) BS02 rna ? GO:0000462 ... P0CX39 25209664
    130 4u4r:S9 (2.801) BS01 rna ? GO:0000462 ... O13516 25209664
    131 4u4r:S9 (2.801) BS02 OHX ? GO:0000462 ... O13516 25209664
    132 4u4r:SM (2.801) BS01 rna ? GO:0000723 ... P39015 25209664
    133 4u4r:SM (2.801) BS02 rna ? GO:0000723 ... P39015 25209664
    134 4u4r:SM (2.801) BS03 MG ? GO:0000723 ... P39015 25209664
    135 4u4r:SR (2.801) BS01 rna ? GO:0001965 ... P38011 25209664
    136 4u4r:SR (2.801) BS02 OHX ? GO:0001965 ... P38011 25209664
    137 4u4r:c0 (2.801) BS01 rna ? GO:0000054 ... Q08745 25209664
    138 4u4r:c1 (2.801) BS01 rna ? GO:0000028 ... P0CX47 25209664
    139 4u4r:c2 (2.801) BS01 rna ? GO:0000028 ... P48589 25209664
    140 4u4r:c3 (2.801) BS01 rna ? GO:0000462 ... P05756 25209664
    141 4u4r:c3 (2.801) BS02 rna ? GO:0000462 ... P05756 25209664
    142 4u4r:c3 (2.801) BS03 OHX ? GO:0000462 ... P05756 25209664
    143 4u4r:c4 (2.801) BS01 rna ? GO:0000028 ... P06367 25209664
    144 4u4r:c5 (2.801) BS01 rna ? GO:0000028 ... Q01855 25209664
    145 4u4r:c5 (2.801) BS02 OHX ? GO:0000028 ... Q01855 25209664
    146 4u4r:c6 (2.801) BS01 rna ? GO:0000462 ... P0CX51 25209664
    147 4u4r:c7 (2.801) BS01 rna ? GO:0000028 ... P02407 25209664
    148 4u4r:c8 (2.801) BS01 rna ? GO:0000054 ... P0CX55 25209664
    149 4u4r:c9 (2.801) BS01 rna ? GO:0000028 ... P07280 25209664
    150 4u4r:c9 (2.801) BS02 MG ? GO:0000028 ... P07280 25209664
    151 4u4r:d0 (2.801) BS01 rna ? GO:0000462 ... P38701 25209664
    152 4u4r:d2 (2.801) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    153 4u4r:d3 (2.801) BS01 rna ? GO:0000462 ... P0CX29 25209664
    154 4u4r:d3 (2.801) BS02 MG ? GO:0000462 ... P0CX29 25209664
    155 4u4r:d4 (2.801) BS01 rna ? GO:0000462 ... P0CX31 25209664
    156 4u4r:d5 (2.801) BS01 rna ? GO:0002181 ... Q3E792 25209664
    157 4u4r:d6 (2.801) BS01 rna ? GO:0003735 ... P39939 25209664
    158 4u4r:d6 (2.801) BS02 ZN ? GO:0003735 ... P39939 25209664
    159 4u4r:d7 (2.801) BS01 rna ? GO:0000028 ... P35997 25209664
    160 4u4r:d8 (2.801) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    161 4u4r:d9 (2.801) BS01 rna ? GO:0002181 ... P41057 25209664
    162 4u4r:d9 (2.801) BS02 ZN ? GO:0002181 ... P41057 25209664
    163 4u4r:d9 (2.801) BS03 OHX ? GO:0002181 ... P41057 25209664
    164 4u4r:e0 (2.801) BS01 rna ? GO:0002181 ... P0CX33 25209664
    165 4u4r:e1 (2.801) BS01 rna ? GO:0003735 ... P05759 25209664
    166 4u4r:l2 (2.801) BS01 rna ? GO:0002181 ... P0CX45 25209664
    167 4u4r:l2 (2.801) BS02 rna ? GO:0002181 ... P0CX45 25209664
    168 4u4r:l3 (2.801) BS01 rna ? GO:0000027 ... P14126 25209664
    169 4u4r:l3 (2.801) BS02 OHX ? GO:0000027 ... P14126 25209664
    170 4u4r:l4 (2.801) BS01 rna ? GO:0002181 ... P10664 25209664
    171 4u4r:l4 (2.801) BS02 rna ? GO:0002181 ... P10664 25209664
    172 4u4r:l4 (2.801) BS03 OHX ? GO:0002181 ... P10664 25209664
    173 4u4r:l4 (2.801) BS04 OHX ? GO:0002181 ... P10664 25209664
    174 4u4r:l5 (2.801) BS01 rna ? GO:0000027 ... P26321 25209664
    175 4u4r:l5 (2.801) BS02 rna ? GO:0000027 ... P26321 25209664
    176 4u4r:l5 (2.801) BS03 MG ? GO:0000027 ... P26321 25209664
    177 4u4r:l5 (2.801) BS04 OHX ? GO:0000027 ... P26321 25209664
    178 4u4r:l5 (2.801) BS05 OHX ? GO:0000027 ... P26321 25209664
    179 4u4r:l6 (2.801) BS01 rna ? GO:0000027 ... Q02326 25209664
    180 4u4r:l7 (2.801) BS01 rna ? GO:0000463 ... P05737 25209664
    181 4u4r:l7 (2.801) BS02 rna ? GO:0000463 ... P05737 25209664
    182 4u4r:l8 (2.801) BS01 rna ? GO:0000470 ... P17076 25209664
    183 4u4r:l8 (2.801) BS02 rna ? GO:0000470 ... P17076 25209664
    184 4u4r:l9 (2.801) BS01 rna ? GO:0002181 ... P05738 25209664
    185 4u4r:m0 (2.801) BS01 rna ? GO:0000027 ... P41805 25209664
    186 4u4r:m0 (2.801) BS02 rna ? GO:0000027 ... P41805 25209664
    187 4u4r:m0 (2.801) BS03 OHX ? GO:0000027 ... P41805 25209664
    188 4u4r:m0 (2.801) BS04 OHX ? GO:0000027 ... P41805 25209664
    189 4u4r:m1 (2.801) BS01 rna ? GO:0000027 ... Q3E757 25209664
    190 4u4r:m1 (2.801) BS02 rna ? GO:0000027 ... Q3E757 25209664
    191 4u4r:m1 (2.801) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    192 4u4r:m2 (2.801) BS01 rna N/A N/A N/A 25209664
    193 4u4r:m3 (2.801) BS01 rna ? GO:0002181 ... Q12690 25209664
    194 4u4r:m3 (2.801) BS02 rna ? GO:0002181 ... Q12690 25209664
    195 4u4r:m4 (2.801) BS01 rna ? GO:0000027 ... P36105 25209664
    196 4u4r:m5 (2.801) BS01 rna ? GO:0002181 ... P05748 25209664
    197 4u4r:m5 (2.801) BS02 rna ? GO:0002181 ... P05748 25209664
    198 4u4r:m6 (2.801) BS01 rna ? GO:0000470 ... P26784 25209664
    199 4u4r:m6 (2.801) BS02 MG ? GO:0000470 ... P26784 25209664
    200 4u4r:m7 (2.801) BS01 rna ? GO:0000448 ... P05740 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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