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BioLiP
Download all results in tab-seperated text for 119 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4u1u:AB (2.95) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    2 4u1u:AC (2.95) BS01 rna ? GO:0003676 ... P0A7V3 24957822
    3 4u1u:AD (2.95) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    4 4u1u:AE (2.95) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    5 4u1u:AF (2.95) BS01 rna ? GO:0003735 ... P02358 24957822
    6 4u1u:AG (2.95) BS01 rna ? GO:0003723 ... P02359 24957822
    7 4u1u:AH (2.95) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    8 4u1u:AI (2.95) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    9 4u1u:AJ (2.95) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    10 4u1u:AK (2.95) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    11 4u1u:AK (2.95) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    12 4u1u:AL (2.95) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    13 4u1u:AM (2.95) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    14 4u1u:AN (2.95) BS01 rna ? GO:0000028 ... P0AG59 24957822
    15 4u1u:AO (2.95) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    16 4u1u:AO (2.95) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    17 4u1u:AP (2.95) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    18 4u1u:AQ (2.95) BS01 rna ? GO:0000028 ... P0AG63 24957822
    19 4u1u:AR (2.95) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    20 4u1u:AS (2.95) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    21 4u1u:AT (2.95) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    22 4u1u:AU (2.95) BS01 rna ? GO:0003735 ... P68679 24957822
    23 4u1u:B0 (2.95) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    24 4u1u:B1 (2.95) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    25 4u1u:B2 (2.95) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    26 4u1u:B3 (2.95) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    27 4u1u:B4 (2.95) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    28 4u1u:B4 (2.95) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    29 4u1u:B5 (2.95) BS01 rna ? GO:0000049 ... Q5SLP7 24957822
    30 4u1u:BC (2.95) BS01 rna ? GO:0000027 ... P60422 24957822
    31 4u1u:BD (2.95) BS01 rna ? GO:0000027 ... P60438 24957822
    32 4u1u:BE (2.95) BS01 rna ? GO:0001070 ... P60723 24957822
    33 4u1u:BF (2.95) BS01 rna ? GO:0000027 ... P62399 24957822
    34 4u1u:BF (2.95) BS02 rna ? GO:0000027 ... P62399 24957822
    35 4u1u:BG (2.95) BS01 rna ? GO:0000027 ... P0AG55 24957822
    36 4u1u:BH (2.95) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    37 4u1u:BH (2.95) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    38 4u1u:BI (2.95) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    39 4u1u:BJ (2.95) BS01 rna ? GO:0002181 ... P0AA10 24957822
    40 4u1u:BK (2.95) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    41 4u1u:BK (2.95) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    42 4u1u:BL (2.95) BS01 rna ? GO:0002181 ... P02413 24957822
    43 4u1u:BM (2.95) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    44 4u1u:BM (2.95) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    45 4u1u:BN (2.95) BS01 rna ? GO:0000027 ... P0AG44 24957822
    46 4u1u:BO (2.95) BS01 rna ? GO:0002181 ... P0C018 24957822
    47 4u1u:BO (2.95) BS02 rna ? GO:0002181 ... P0C018 24957822
    48 4u1u:BP (2.95) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    49 4u1u:BP (2.95) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    50 4u1u:BQ (2.95) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    51 4u1u:BR (2.95) BS01 rna ? GO:0002181 ... P0AG48 24957822
    52 4u1u:BS (2.95) BS01 rna ? GO:0002181 ... P61175 24957822
    53 4u1u:BT (2.95) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    54 4u1u:BU (2.95) BS01 rna ? GO:0000027 ... P60624 24957822
    55 4u1u:BV (2.95) BS01 rna ? GO:0000027 ... P68919 24957822
    56 4u1u:BV (2.95) BS02 rna ? GO:0000027 ... P68919 24957822
    57 4u1u:BW (2.95) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    58 4u1u:BW (2.95) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    59 4u1u:BX (2.95) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    60 4u1u:BY (2.95) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    61 4u1u:BZ (2.95) BS01 rna ? GO:0000027 ... P0AG51 24957822
    62 4u1u:BZ (2.95) BS02 rna ? GO:0000027 ... P0AG51 24957822
    63 4u1u:CB (2.95) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    64 4u1u:CC (2.95) BS01 rna ? GO:0003676 ... P0A7V3 24957822
    65 4u1u:CD (2.95) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    66 4u1u:CD (2.95) BS02 rna ? GO:0000028 ... P0A7V8 24957822
    67 4u1u:CE (2.95) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    68 4u1u:CF (2.95) BS01 rna ? GO:0003735 ... P02358 24957822
    69 4u1u:CG (2.95) BS01 rna ? GO:0003723 ... P02359 24957822
    70 4u1u:CH (2.95) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    71 4u1u:CI (2.95) BS01 rna ? GO:0000049 ... P0A7X3 24957822
    72 4u1u:CJ (2.95) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    73 4u1u:CK (2.95) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    74 4u1u:CL (2.95) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    75 4u1u:CM (2.95) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    76 4u1u:CN (2.95) BS01 rna ? GO:0000028 ... P0AG59 24957822
    77 4u1u:CO (2.95) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    78 4u1u:CO (2.95) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    79 4u1u:CP (2.95) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    80 4u1u:CQ (2.95) BS01 rna ? GO:0000028 ... P0AG63 24957822
    81 4u1u:CR (2.95) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    82 4u1u:CS (2.95) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    83 4u1u:CT (2.95) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    84 4u1u:CU (2.95) BS01 rna ? GO:0003735 ... P68679 24957822
    85 4u1u:D0 (2.95) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    86 4u1u:D1 (2.95) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    87 4u1u:D2 (2.95) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    88 4u1u:D3 (2.95) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    89 4u1u:D4 (2.95) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    90 4u1u:DC (2.95) BS01 rna ? GO:0000027 ... P60422 24957822
    91 4u1u:DD (2.95) BS01 rna ? GO:0000027 ... P60438 24957822
    92 4u1u:DE (2.95) BS01 rna ? GO:0001070 ... P60723 24957822
    93 4u1u:DF (2.95) BS01 rna ? GO:0000027 ... P62399 24957822
    94 4u1u:DF (2.95) BS02 rna ? GO:0000027 ... P62399 24957822
    95 4u1u:DG (2.95) BS01 rna ? GO:0000027 ... P0AG55 24957822
    96 4u1u:DH (2.95) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    97 4u1u:DI (2.95) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    98 4u1u:DJ (2.95) BS01 rna ? GO:0002181 ... P0AA10 24957822
    99 4u1u:DK (2.95) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    100 4u1u:DL (2.95) BS01 rna ? GO:0002181 ... P02413 24957822
    101 4u1u:DM (2.95) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    102 4u1u:DM (2.95) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    103 4u1u:DN (2.95) BS01 rna ? GO:0000027 ... P0AG44 24957822
    104 4u1u:DO (2.95) BS01 rna ? GO:0002181 ... P0C018 24957822
    105 4u1u:DO (2.95) BS02 rna ? GO:0002181 ... P0C018 24957822
    106 4u1u:DP (2.95) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    107 4u1u:DP (2.95) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    108 4u1u:DQ (2.95) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    109 4u1u:DR (2.95) BS01 rna ? GO:0002181 ... P0AG48 24957822
    110 4u1u:DS (2.95) BS01 rna ? GO:0002181 ... P61175 24957822
    111 4u1u:DT (2.95) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    112 4u1u:DU (2.95) BS01 rna ? GO:0000027 ... P60624 24957822
    113 4u1u:DV (2.95) BS01 rna ? GO:0000027 ... P68919 24957822
    114 4u1u:DV (2.95) BS02 rna ? GO:0000027 ... P68919 24957822
    115 4u1u:DW (2.95) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    116 4u1u:DW (2.95) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    117 4u1u:DX (2.95) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    118 4u1u:DY (2.95) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    119 4u1u:DZ (2.95) BS01 rna ? GO:0000027 ... P0AG51 24957822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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