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BioLiP
Download all results in tab-seperated text for 139 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4tue:QB (3.5) BS01 rna ? GO:0003735 ... P80371 25352689
    2 4tue:QC (3.5) BS01 rna ? GO:0003676 ... P80372 25352689
    3 4tue:QD (3.5) BS01 rna ? GO:0003723 ... P80373 25352689
    4 4tue:QD (3.5) BS02 ZN ? GO:0003723 ... P80373 25352689
    5 4tue:QE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    6 4tue:QF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    7 4tue:QF (3.5) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    8 4tue:QG (3.5) BS01 rna ? GO:0000028 ... P17291 25352689
    9 4tue:QH (3.5) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    10 4tue:QI (3.5) BS01 rna ? GO:0000049 ... P80374 25352689
    11 4tue:QI (3.5) BS02 rna ? GO:0000049 ... P80374 25352689
    12 4tue:QJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    13 4tue:QJ (3.5) BS02 rna ? GO:0000049 ... Q5SHN7 25352689
    14 4tue:QK (3.5) BS01 rna ? GO:0003735 ... P80376 25352689
    15 4tue:QK (3.5) BS02 MG ? GO:0003735 ... P80376 25352689
    16 4tue:QL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    17 4tue:QM (3.5) BS01 rna ? GO:0000049 ... P80377 25352689
    18 4tue:QM (3.5) BS02 rna ? GO:0000049 ... P80377 25352689
    19 4tue:QM (3.5) BS03 MG ? GO:0000049 ... P80377 25352689
    20 4tue:QN (3.5) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    21 4tue:QN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    22 4tue:QO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    23 4tue:QO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    24 4tue:QP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    25 4tue:QQ (3.5) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    26 4tue:QR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    27 4tue:QS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    28 4tue:QT (3.5) BS01 rna ? GO:0003723 ... P80380 25352689
    29 4tue:R0 (3.5) BS01 rna ? GO:0003735 ... P60493 25352689
    30 4tue:R0 (3.5) BS02 rna ? GO:0003735 ... P60493 25352689
    31 4tue:R0 (3.5) BS03 rna ? GO:0003735 ... P60493 25352689
    32 4tue:R1 (3.5) BS01 rna ? GO:0003735 ... P60494 25352689
    33 4tue:R2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    34 4tue:R3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    35 4tue:R3 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    36 4tue:R4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    37 4tue:R4 (3.5) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    38 4tue:R5 (3.5) BS01 rna ? GO:0003735 ... P80339 25352689
    39 4tue:R6 (3.5) BS01 rna ? GO:0000049 ... P35871 25352689
    40 4tue:R7 (3.5) BS01 rna ? GO:0003735 ... P80340 25352689
    41 4tue:R8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    42 4tue:R9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    43 4tue:RD (3.5) BS01 rna ? GO:0002181 ... P60405 25352689
    44 4tue:RD (3.5) BS02 rna ? GO:0002181 ... P60405 25352689
    45 4tue:RD (3.5) BS03 MG ? GO:0002181 ... P60405 25352689
    46 4tue:RE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    47 4tue:RF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    48 4tue:RF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 25352689
    49 4tue:RG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    50 4tue:RG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    51 4tue:RG (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    52 4tue:RH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    53 4tue:RI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    54 4tue:RN (3.5) BS01 rna ? GO:0003729 ... P60488 25352689
    55 4tue:RO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    56 4tue:RO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    57 4tue:RP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    58 4tue:RP (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 25352689
    59 4tue:RQ (3.5) BS01 rna ? GO:0000049 ... P60489 25352689
    60 4tue:RQ (3.5) BS02 rna ? GO:0000049 ... P60489 25352689
    61 4tue:RR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    62 4tue:RS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    63 4tue:RS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    64 4tue:RT (3.5) BS01 rna ? GO:0003735 ... P60490 25352689
    65 4tue:RT (3.5) BS02 rna ? GO:0003735 ... P60490 25352689
    66 4tue:RU (3.5) BS01 rna ? GO:0000027 ... P60491 25352689
    67 4tue:RV (3.5) BS01 rna ? GO:0003723 ... P60492 25352689
    68 4tue:RW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    69 4tue:RX (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    70 4tue:RY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    71 4tue:RZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    72 4tue:RZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    73 4tue:XB (3.5) BS01 rna ? GO:0003735 ... P80371 25352689
    74 4tue:XC (3.5) BS01 rna ? GO:0003676 ... P80372 25352689
    75 4tue:XD (3.5) BS01 rna ? GO:0003723 ... P80373 25352689
    76 4tue:XD (3.5) BS02 ZN ? GO:0003723 ... P80373 25352689
    77 4tue:XE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    78 4tue:XF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    79 4tue:XG (3.5) BS01 rna ? GO:0000028 ... P17291 25352689
    80 4tue:XH (3.5) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    81 4tue:XI (3.5) BS01 rna ? GO:0000049 ... P80374 25352689
    82 4tue:XI (3.5) BS02 rna ? GO:0000049 ... P80374 25352689
    83 4tue:XJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    84 4tue:XK (3.5) BS01 rna ? GO:0003735 ... P80376 25352689
    85 4tue:XL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    86 4tue:XL (3.5) BS02 rna ? GO:0000049 ... Q5SHN3 25352689
    87 4tue:XM (3.5) BS01 rna ? GO:0000049 ... P80377 25352689
    88 4tue:XM (3.5) BS02 rna ? GO:0000049 ... P80377 25352689
    89 4tue:XN (3.5) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    90 4tue:XN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    91 4tue:XO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    92 4tue:XO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    93 4tue:XP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    94 4tue:XQ (3.5) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    95 4tue:XR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    96 4tue:XS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    97 4tue:XT (3.5) BS01 rna ? GO:0003723 ... P80380 25352689
    98 4tue:Y0 (3.5) BS01 rna ? GO:0003735 ... P60493 25352689
    99 4tue:Y0 (3.5) BS02 rna ? GO:0003735 ... P60493 25352689
    100 4tue:Y0 (3.5) BS03 rna ? GO:0003735 ... P60493 25352689
    101 4tue:Y1 (3.5) BS01 rna ? GO:0003735 ... P60494 25352689
    102 4tue:Y2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    103 4tue:Y3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    104 4tue:Y3 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    105 4tue:Y4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    106 4tue:Y4 (3.5) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    107 4tue:Y5 (3.5) BS01 rna ? GO:0003735 ... P80339 25352689
    108 4tue:Y6 (3.5) BS01 rna ? GO:0000049 ... P35871 25352689
    109 4tue:Y7 (3.5) BS01 rna ? GO:0003735 ... P80340 25352689
    110 4tue:Y8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    111 4tue:Y9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    112 4tue:YD (3.5) BS01 rna ? GO:0002181 ... P60405 25352689
    113 4tue:YD (3.5) BS02 MG ? GO:0002181 ... P60405 25352689
    114 4tue:YE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    115 4tue:YF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    116 4tue:YG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    117 4tue:YG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    118 4tue:YH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    119 4tue:YI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    120 4tue:YI (3.5) BS02 rna ? GO:0003735 ... Q5SLQ1 25352689
    121 4tue:YN (3.5) BS01 rna ? GO:0003729 ... P60488 25352689
    122 4tue:YO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    123 4tue:YO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    124 4tue:YP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    125 4tue:YQ (3.5) BS01 rna ? GO:0000049 ... P60489 25352689
    126 4tue:YQ (3.5) BS02 rna ? GO:0000049 ... P60489 25352689
    127 4tue:YQ (3.5) BS03 MG ? GO:0000049 ... P60489 25352689
    128 4tue:YR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    129 4tue:YS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    130 4tue:YS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    131 4tue:YT (3.5) BS01 rna ? GO:0003735 ... P60490 25352689
    132 4tue:YT (3.5) BS02 rna ? GO:0003735 ... P60490 25352689
    133 4tue:YU (3.5) BS01 rna ? GO:0000027 ... P60491 25352689
    134 4tue:YV (3.5) BS01 rna ? GO:0003723 ... P60492 25352689
    135 4tue:YW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    136 4tue:YX (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    137 4tue:YY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    138 4tue:YZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    139 4tue:YZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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