Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 97 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4toe:A (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    2 4toe:A (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    3 4toe:A (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    4 4toe:A (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    5 4toe:B (2.2) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    6 4toe:B (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    7 4toe:B (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    8 4toe:B (2.2) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    9 4toe:C (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    10 4toe:C (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    11 4toe:C (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    12 4toe:C (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    13 4toe:D (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    14 4toe:D (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    15 4toe:D (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    16 4toe:D (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    17 4toe:E (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    18 4toe:E (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    19 4toe:E (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    20 4toe:E (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    21 4toe:F (2.2) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    22 4toe:F (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    23 4toe:F (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    24 4toe:F (2.2) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    25 4toe:G (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    26 4toe:G (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    27 4toe:G (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    28 4toe:G (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    29 4toe:H (2.2) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    30 4toe:H (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    31 4toe:H (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    32 4toe:H (2.2) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    33 4toe:I (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    34 4toe:I (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    35 4toe:I (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    36 4toe:I (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    37 4toe:J (2.2) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    38 4toe:J (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    39 4toe:J (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    40 4toe:J (2.2) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    41 4toe:K (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    42 4toe:K (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    43 4toe:K (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    44 4toe:K (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    45 4toe:L (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    46 4toe:L (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    47 4toe:L (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    48 4toe:L (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    49 4toe:M (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    50 4toe:M (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    51 4toe:M (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    52 4toe:M (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    53 4toe:N (2.2) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    54 4toe:N (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    55 4toe:N (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    56 4toe:N (2.2) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    57 4toe:O (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    58 4toe:O (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    59 4toe:O (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    60 4toe:O (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    61 4toe:P (2.2) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    62 4toe:P (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    63 4toe:P (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    64 4toe:P (2.2) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    65 4toe:Q (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    66 4toe:Q (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    67 4toe:Q (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    68 4toe:Q (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    69 4toe:R (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    70 4toe:R (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    71 4toe:R (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    72 4toe:R (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    73 4toe:S (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    74 4toe:S (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    75 4toe:S (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    76 4toe:S (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    77 4toe:T (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    78 4toe:T (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    79 4toe:T (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    80 4toe:T (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    81 4toe:U (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    82 4toe:U (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    83 4toe:U (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    84 4toe:U (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    85 4toe:V (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    86 4toe:V (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    87 4toe:V (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    88 4toe:V (2.2) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    89 4toe:V (2.2) BS05 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    90 4toe:W (2.2) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    91 4toe:W (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    92 4toe:W (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    93 4toe:W (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    94 4toe:X (2.2) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    95 4toe:X (2.2) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    96 4toe:X (2.2) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    97 4toe:X (2.2) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 25640193
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218