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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4rjk:A (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    2 4rjk:A (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    3 4rjk:A (2.5) BS03 TPP N/A GO:0000287 ... N/A 25393087
    4 4rjk:B (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    5 4rjk:B (2.5) BS02 TPP N/A GO:0000287 ... N/A 25393087
    6 4rjk:B (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    7 4rjk:C (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    8 4rjk:C (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    9 4rjk:C (2.5) BS03 TPP N/A GO:0000287 ... N/A 25393087
    10 4rjk:D (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    11 4rjk:D (2.5) BS02 TPP N/A GO:0000287 ... N/A 25393087
    12 4rjk:D (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    13 4rjk:E (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    14 4rjk:E (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    15 4rjk:E (2.5) BS03 TPP N/A GO:0000287 ... N/A 25393087
    16 4rjk:F (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    17 4rjk:F (2.5) BS02 TPP N/A GO:0000287 ... N/A 25393087
    18 4rjk:F (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    19 4rjk:F (2.5) BS04 PYR N/A GO:0000287 ... N/A 25393087
    20 4rjk:G (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    21 4rjk:G (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    22 4rjk:G (2.5) BS03 TDL N/A GO:0000287 ... N/A 25393087
    23 4rjk:H (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    24 4rjk:H (2.5) BS02 TDL N/A GO:0000287 ... N/A 25393087
    25 4rjk:H (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    26 4rjk:H (2.5) BS04 PYR N/A GO:0000287 ... N/A 25393087
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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