Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4oq9:A (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    2 4oq9:A (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    3 4oq9:A (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    4 4oq9:A (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    5 4oq9:B (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    6 4oq9:B (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    7 4oq9:B (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    8 4oq9:C (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    9 4oq9:C (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    10 4oq9:C (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    11 4oq9:D (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    12 4oq9:D (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    13 4oq9:D (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    14 4oq9:D (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    15 4oq9:E (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    16 4oq9:E (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    17 4oq9:E (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    18 4oq9:E (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    19 4oq9:E (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    20 4oq9:E (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    21 4oq9:F (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    22 4oq9:F (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    23 4oq9:F (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    24 4oq9:F (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    25 4oq9:F (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    26 4oq9:F (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    27 4oq9:G (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    28 4oq9:G (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    29 4oq9:G (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    30 4oq9:H (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    31 4oq9:H (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    32 4oq9:H (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    33 4oq9:I (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    34 4oq9:I (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    35 4oq9:I (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    36 4oq9:I (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    37 4oq9:J (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    38 4oq9:J (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    39 4oq9:J (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    40 4oq9:J (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    41 4oq9:J (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    42 4oq9:J (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    43 4oq9:J (1.45) BS07 rna ? GO:0005198 ... P17574 25195746
    44 4oq9:K (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    45 4oq9:K (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    46 4oq9:K (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    47 4oq9:K (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    48 4oq9:K (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    49 4oq9:K (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    50 4oq9:L (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    51 4oq9:L (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    52 4oq9:L (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    53 4oq9:M (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    54 4oq9:M (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    55 4oq9:M (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    56 4oq9:N (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    57 4oq9:N (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    58 4oq9:N (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    59 4oq9:O (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    60 4oq9:O (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    61 4oq9:O (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    62 4oq9:O (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    63 4oq9:O (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    64 4oq9:O (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218