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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4nzb:A (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426
    2 4nzb:A (2.68) BS02 NSE ? GO:0004888 ... P58154 24982426
    3 4nzb:B (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426
    4 4nzb:B (2.68) BS02 NSE ? GO:0004888 ... P58154 24982426
    5 4nzb:C (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426
    6 4nzb:E (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426
    7 4nzb:I (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426 PDBbind: -logKd/Ki=4.17, Ki~67uM
    8 4nzb:J (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426 PDBbind: -logKd/Ki=4.17, Ki~67uM
    9 4nzb:K (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426
    10 4nzb:L (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426
    11 4nzb:M (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426
    12 4nzb:N (2.68) BS01 NSE ? GO:0004888 ... P58154 24982426
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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