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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4lw9:A (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    2 4lw9:A (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    3 4lw9:A (1.9) BS03 ZN ? GO:0015627 ... P45773 N/A
    4 4lw9:A (1.9) BS04 CA ? GO:0015627 ... P45773 N/A
    5 4lw9:B (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    6 4lw9:B (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    7 4lw9:B (1.9) BS03 CA ? GO:0015627 ... P45773 N/A
    8 4lw9:B (1.9) BS04 ZN ? GO:0015627 ... P45773 N/A
    9 4lw9:C (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    10 4lw9:C (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    11 4lw9:C (1.9) BS03 CA ? GO:0015627 ... P45773 N/A
    12 4lw9:D (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    13 4lw9:D (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    14 4lw9:D (1.9) BS03 ZN ? GO:0015627 ... P45773 N/A
    15 4lw9:D (1.9) BS04 CA ? GO:0015627 ... P45773 N/A
    16 4lw9:E (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    17 4lw9:E (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    18 4lw9:E (1.9) BS03 ZN ? GO:0015627 ... P45773 N/A
    19 4lw9:E (1.9) BS04 CA ? GO:0015627 ... P45773 N/A
    20 4lw9:F (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    21 4lw9:F (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    22 4lw9:F (1.9) BS03 CA ? GO:0015627 ... P45773 N/A
    23 4lw9:F (1.9) BS04 ZN ? GO:0015627 ... P45773 N/A
    24 4lw9:I (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    25 4lw9:I (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    26 4lw9:I (1.9) BS03 ZN ? GO:0015627 ... P45773 N/A
    27 4lw9:I (1.9) BS04 CA ? GO:0015627 ... P45773 N/A
    28 4lw9:J (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    29 4lw9:J (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    30 4lw9:J (1.9) BS03 ZN ? GO:0015627 ... P45773 N/A
    31 4lw9:J (1.9) BS04 CA ? GO:0015627 ... P45773 N/A
    32 4lw9:K (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    33 4lw9:K (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    34 4lw9:K (1.9) BS03 ZN ? GO:0015627 ... P45773 N/A
    35 4lw9:K (1.9) BS04 CA ? GO:0015627 ... P45773 N/A
    36 4lw9:L (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    37 4lw9:L (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    38 4lw9:L (1.9) BS03 ZN ? GO:0015627 ... P45773 N/A
    39 4lw9:L (1.9) BS04 CA ? GO:0015627 ... P45773 N/A
    40 4lw9:Q (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    41 4lw9:Q (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    42 4lw9:Q (1.9) BS03 ZN ? GO:0015627 ... P45773 N/A
    43 4lw9:Q (1.9) BS04 CA ? GO:0015627 ... P45773 N/A
    44 4lw9:R (1.9) BS01 ZN ? GO:0015627 ... P45773 N/A
    45 4lw9:R (1.9) BS02 ZN ? GO:0015627 ... P45773 N/A
    46 4lw9:R (1.9) BS03 ZN ? GO:0015627 ... P45773 N/A
    47 4lw9:R (1.9) BS04 CA ? GO:0015627 ... P45773 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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