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BioLiP
Download all results in tab-seperated text for 133 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4lfz:QB (3.92) BS01 rna ? GO:0003735 ... P80371 25128388
    2 4lfz:QC (3.92) BS01 rna ? GO:0003676 ... P80372 25128388
    3 4lfz:QD (3.92) BS01 rna ? GO:0003723 ... P80373 25128388
    4 4lfz:QD (3.92) BS02 ZN ? GO:0003723 ... P80373 25128388
    5 4lfz:QE (3.92) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    6 4lfz:QF (3.92) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    7 4lfz:QG (3.92) BS01 rna ? GO:0000028 ... P17291 25128388
    8 4lfz:QH (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    9 4lfz:QH (3.92) BS02 MG N/A GO:0003735 ... N/A 25128388
    10 4lfz:QI (3.92) BS01 rna ? GO:0000049 ... P80374 25128388
    11 4lfz:QI (3.92) BS02 rna ? GO:0000049 ... P80374 25128388
    12 4lfz:QJ (3.92) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    13 4lfz:QK (3.92) BS01 rna ? GO:0003735 ... P80376 25128388
    14 4lfz:QL (3.92) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    15 4lfz:QM (3.92) BS01 rna ? GO:0000049 ... P80377 25128388
    16 4lfz:QM (3.92) BS02 rna ? GO:0000049 ... P80377 25128388
    17 4lfz:QM (3.92) BS03 MG ? GO:0000049 ... P80377 25128388
    18 4lfz:QN (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    19 4lfz:QN (3.92) BS02 ZN N/A GO:0003735 ... N/A 25128388
    20 4lfz:QO (3.92) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    21 4lfz:QO (3.92) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    22 4lfz:QP (3.92) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    23 4lfz:QQ (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    24 4lfz:QR (3.92) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    25 4lfz:QS (3.92) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    26 4lfz:QT (3.92) BS01 rna ? GO:0003723 ... P80380 25128388
    27 4lfz:R0 (3.92) BS01 rna ? GO:0003735 ... P60493 25128388
    28 4lfz:R0 (3.92) BS02 rna ? GO:0003735 ... P60493 25128388
    29 4lfz:R1 (3.92) BS01 rna ? GO:0003735 ... P60494 25128388
    30 4lfz:R2 (3.92) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    31 4lfz:R3 (3.92) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    32 4lfz:R4 (3.92) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    33 4lfz:R5 (3.92) BS01 rna ? GO:0003735 ... P80339 25128388
    34 4lfz:R6 (3.92) BS01 rna ? GO:0000049 ... P35871 25128388
    35 4lfz:R7 (3.92) BS01 rna ? GO:0003735 ... P80340 25128388
    36 4lfz:R8 (3.92) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    37 4lfz:R9 (3.92) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    38 4lfz:RD (3.92) BS01 rna ? GO:0002181 ... P60405 25128388
    39 4lfz:RD (3.92) BS02 rna ? GO:0002181 ... P60405 25128388
    40 4lfz:RD (3.92) BS03 MG ? GO:0002181 ... P60405 25128388
    41 4lfz:RD (3.92) BS04 MG ? GO:0002181 ... P60405 25128388
    42 4lfz:RE (3.92) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    43 4lfz:RF (3.92) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    44 4lfz:RF (3.92) BS02 MG ? GO:0003735 ... Q5SHN9 25128388
    45 4lfz:RG (3.92) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    46 4lfz:RG (3.92) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    47 4lfz:RH (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    48 4lfz:RI (3.92) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    49 4lfz:RN (3.92) BS01 rna ? GO:0003729 ... P60488 25128388
    50 4lfz:RO (3.92) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    51 4lfz:RO (3.92) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    52 4lfz:RP (3.92) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    53 4lfz:RQ (3.92) BS01 rna ? GO:0000049 ... P60489 25128388
    54 4lfz:RR (3.92) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    55 4lfz:RS (3.92) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    56 4lfz:RS (3.92) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    57 4lfz:RT (3.92) BS01 rna ? GO:0003735 ... P60490 25128388
    58 4lfz:RT (3.92) BS02 rna ? GO:0003735 ... P60490 25128388
    59 4lfz:RU (3.92) BS01 rna ? GO:0000027 ... P60491 25128388
    60 4lfz:RV (3.92) BS01 rna ? GO:0003723 ... P60492 25128388
    61 4lfz:RW (3.92) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    62 4lfz:RX (3.92) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    63 4lfz:RY (3.92) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    64 4lfz:RZ (3.92) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    65 4lfz:RZ (3.92) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    66 4lfz:XB (3.92) BS01 rna ? GO:0003735 ... P80371 25128388
    67 4lfz:XC (3.92) BS01 rna ? GO:0003676 ... P80372 25128388
    68 4lfz:XD (3.92) BS01 rna ? GO:0003723 ... P80373 25128388
    69 4lfz:XD (3.92) BS02 ZN ? GO:0003723 ... P80373 25128388
    70 4lfz:XE (3.92) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    71 4lfz:XF (3.92) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    72 4lfz:XG (3.92) BS01 rna ? GO:0000028 ... P17291 25128388
    73 4lfz:XH (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    74 4lfz:XI (3.92) BS01 rna ? GO:0000049 ... P80374 25128388
    75 4lfz:XI (3.92) BS02 rna ? GO:0000049 ... P80374 25128388
    76 4lfz:XJ (3.92) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    77 4lfz:XK (3.92) BS01 rna ? GO:0003735 ... P80376 25128388
    78 4lfz:XL (3.92) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    79 4lfz:XL (3.92) BS02 MG ? GO:0000049 ... Q5SHN3 25128388
    80 4lfz:XM (3.92) BS01 rna ? GO:0000049 ... P80377 25128388
    81 4lfz:XM (3.92) BS02 rna ? GO:0000049 ... P80377 25128388
    82 4lfz:XM (3.92) BS03 MG ? GO:0000049 ... P80377 25128388
    83 4lfz:XM (3.92) BS04 MG ? GO:0000049 ... P80377 25128388
    84 4lfz:XN (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    85 4lfz:XN (3.92) BS02 ZN N/A GO:0003735 ... N/A 25128388
    86 4lfz:XO (3.92) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    87 4lfz:XO (3.92) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    88 4lfz:XP (3.92) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    89 4lfz:XQ (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    90 4lfz:XR (3.92) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    91 4lfz:XS (3.92) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    92 4lfz:XT (3.92) BS01 rna ? GO:0003723 ... P80380 25128388
    93 4lfz:Y0 (3.92) BS01 rna ? GO:0003735 ... P60493 25128388
    94 4lfz:Y0 (3.92) BS02 rna ? GO:0003735 ... P60493 25128388
    95 4lfz:Y0 (3.92) BS03 rna ? GO:0003735 ... P60493 25128388
    96 4lfz:Y1 (3.92) BS01 rna ? GO:0003735 ... P60494 25128388
    97 4lfz:Y2 (3.92) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    98 4lfz:Y3 (3.92) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    99 4lfz:Y3 (3.92) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    100 4lfz:Y4 (3.92) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    101 4lfz:Y5 (3.92) BS01 rna ? GO:0003735 ... P80339 25128388
    102 4lfz:Y6 (3.92) BS01 rna ? GO:0000049 ... P35871 25128388
    103 4lfz:Y7 (3.92) BS01 rna ? GO:0003735 ... P80340 25128388
    104 4lfz:Y8 (3.92) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    105 4lfz:Y9 (3.92) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    106 4lfz:Y9 (3.92) BS02 ZN ? GO:0003735 ... Q5SHR2 25128388
    107 4lfz:YD (3.92) BS01 rna ? GO:0002181 ... P60405 25128388
    108 4lfz:YE (3.92) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    109 4lfz:YF (3.92) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    110 4lfz:YG (3.92) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    111 4lfz:YG (3.92) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    112 4lfz:YH (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    113 4lfz:YI (3.92) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    114 4lfz:YI (3.92) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    115 4lfz:YN (3.92) BS01 rna ? GO:0003729 ... P60488 25128388
    116 4lfz:YO (3.92) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    117 4lfz:YO (3.92) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    118 4lfz:YP (3.92) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    119 4lfz:YP (3.92) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    120 4lfz:YQ (3.92) BS01 rna ? GO:0000049 ... P60489 25128388
    121 4lfz:YQ (3.92) BS02 rna ? GO:0000049 ... P60489 25128388
    122 4lfz:YR (3.92) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    123 4lfz:YS (3.92) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    124 4lfz:YS (3.92) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    125 4lfz:YT (3.92) BS01 rna ? GO:0003735 ... P60490 25128388
    126 4lfz:YT (3.92) BS02 rna ? GO:0003735 ... P60490 25128388
    127 4lfz:YU (3.92) BS01 rna ? GO:0000027 ... P60491 25128388
    128 4lfz:YV (3.92) BS01 rna ? GO:0003723 ... P60492 25128388
    129 4lfz:YW (3.92) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    130 4lfz:YX (3.92) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    131 4lfz:YY (3.92) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    132 4lfz:YZ (3.92) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    133 4lfz:YZ (3.92) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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