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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4kzy:A (7.01) BS01 rna ? GO:0000028 ... G1TGI6 23873042
    2 4kzy:B (7.01) BS01 rna ? GO:0003735 ... G1TN72 23873042
    3 4kzy:C (7.01) BS01 rna ? GO:0003723 ... G1U2Z9 23873042
    4 4kzy:D (7.01) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 23873042
    5 4kzy:E (7.01) BS01 rna ? GO:0003723 ... G1TK17 23873042
    6 4kzy:F (7.01) BS01 rna ? GO:0000028 ... G1TFM5 23873042
    7 4kzy:G (7.01) BS01 rna ? GO:0000082 ... G1TM55 23873042
    8 4kzy:H (7.01) BS01 rna ? GO:0003735 ... G1SVB0 23873042
    9 4kzy:I (7.01) BS01 rna ? GO:0000462 ... G1TJW1 23873042
    10 4kzy:J (7.01) BS01 rna ? GO:0003723 ... B7NZS8 23873042
    11 4kzy:K (7.01) BS01 rna ? GO:0003723 ... G1T168 23873042
    12 4kzy:L (7.01) BS01 rna ? GO:0003735 ... G1TRM4 23873042
    13 4kzy:M (7.01) BS01 rna ? GO:0003735 ... G1SFR8 23873042
    14 4kzy:N (7.01) BS01 rna ? GO:0003735 ... G1SP51 23873042
    15 4kzy:O (7.01) BS01 rna ? GO:0000028 ... G1T1F0 23873042
    16 4kzy:P (7.01) BS01 rna ? GO:0000028 ... G1U0Q2 23873042
    17 4kzy:Q (7.01) BS01 rna ? GO:0000462 ... G1SGX4 23873042
    18 4kzy:R (7.01) BS01 rna ? GO:0003735 ... G1TU13 23873042
    19 4kzy:S (7.01) BS01 rna ? GO:0003676 ... G1TPG3 23873042
    20 4kzy:T (7.01) BS01 rna ? GO:0000028 ... G1TN62 23873042
    21 4kzy:U (7.01) BS01 rna ? GO:0003723 ... G1SIZ2 23873042
    22 4kzy:W (7.01) BS01 rna ? GO:0003735 ... G1TG89 23873042
    23 4kzy:X (7.01) BS01 rna ? GO:0003735 ... G1SZ47 23873042
    24 4kzy:Y (7.01) BS01 rna ? GO:0003735 ... G1TS40 23873042
    25 4kzy:Z (7.01) BS01 rna ? GO:0003735 ... G1TDB3 23873042
    26 4kzy:a (7.01) BS01 rna ? GO:0003729 ... G1TFE8 23873042
    27 4kzy:b (7.01) BS01 rna ? GO:0000028 ... G1TZ76 23873042
    28 4kzy:c (7.01) BS01 rna ? GO:0000028 ... G1TIB4 23873042
    29 4kzy:d (7.01) BS01 rna ? GO:0003735 ... G1U7M4 23873042
    30 4kzy:e (7.01) BS01 rna ? GO:0003735 ... G1T8A2 23873042
    31 4kzy:f (7.01) BS01 rna ? GO:0003723 ... G1SK22 23873042
    32 4kzy:g (7.01) BS01 rna ? GO:0001891 ... G1SJB4 23873042
    33 4kzy:l (7.01) BS01 rna ? GO:0003723 ... P41567 23873042
    34 4kzy:n (7.01) BS01 rna ? GO:0000049 ... P47813 23873042
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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