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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ky8:A (3.084) BS01 NDP N/A GO:0004146 ... N/A 23927969
    2 4ky8:A (3.084) BS02 UFP N/A GO:0004146 ... N/A 23927969
    3 4ky8:A (3.084) BS03 MTX N/A GO:0004146 ... N/A 23927969
    4 4ky8:A (3.084) BS04 1UF N/A GO:0004146 ... N/A 23927969
    5 4ky8:A (3.084) BS05 UFP N/A GO:0004146 ... N/A 23927969
    6 4ky8:B (3.084) BS01 UFP N/A GO:0004146 ... N/A 23927969
    7 4ky8:B (3.084) BS02 NDP N/A GO:0004146 ... N/A 23927969
    8 4ky8:B (3.084) BS03 UFP N/A GO:0004146 ... N/A 23927969
    9 4ky8:B (3.084) BS04 MTX N/A GO:0004146 ... N/A 23927969
    10 4ky8:B (3.084) BS05 1UF N/A GO:0004146 ... N/A 23927969
    11 4ky8:C (3.084) BS01 NDP N/A GO:0004146 ... N/A 23927969
    12 4ky8:C (3.084) BS02 UFP N/A GO:0004146 ... N/A 23927969
    13 4ky8:C (3.084) BS03 MTX N/A GO:0004146 ... N/A 23927969
    14 4ky8:C (3.084) BS04 1UF N/A GO:0004146 ... N/A 23927969
    15 4ky8:C (3.084) BS05 UFP N/A GO:0004146 ... N/A 23927969
    16 4ky8:D (3.084) BS01 UFP N/A GO:0004146 ... N/A 23927969
    17 4ky8:D (3.084) BS02 NDP N/A GO:0004146 ... N/A 23927969
    18 4ky8:D (3.084) BS03 UFP N/A GO:0004146 ... N/A 23927969
    19 4ky8:D (3.084) BS04 MTX N/A GO:0004146 ... N/A 23927969
    20 4ky8:D (3.084) BS05 1UF N/A GO:0004146 ... N/A 23927969
    21 4ky8:E (3.084) BS01 NDP N/A GO:0004146 ... N/A 23927969
    22 4ky8:E (3.084) BS02 UFP N/A GO:0004146 ... N/A 23927969
    23 4ky8:E (3.084) BS03 MTX N/A GO:0004146 ... N/A 23927969
    24 4ky8:E (3.084) BS04 1UF N/A GO:0004146 ... N/A 23927969
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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