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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ky4:A (2.79) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    2 4ky4:A (2.79) BS02 04J 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    3 4ky4:A (2.79) BS03 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    4 4ky4:A (2.79) BS04 1UE 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841 BindingDB: IC50=23nM
    5 4ky4:A (2.79) BS05 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    6 4ky4:B (2.79) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    7 4ky4:B (2.79) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    8 4ky4:B (2.79) BS03 04J 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    9 4ky4:B (2.79) BS04 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    10 4ky4:B (2.79) BS05 1UE 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841 BindingDB: IC50=23nM
    11 4ky4:C (2.79) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    12 4ky4:C (2.79) BS02 04J 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    13 4ky4:C (2.79) BS03 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    14 4ky4:C (2.79) BS04 1UE 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841 BindingDB: IC50=23nM
    15 4ky4:C (2.79) BS05 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    16 4ky4:D (2.79) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    17 4ky4:D (2.79) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    18 4ky4:D (2.79) BS03 04J 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    19 4ky4:D (2.79) BS04 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    20 4ky4:D (2.79) BS05 1UE 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841 BindingDB: IC50=23nM
    21 4ky4:E (2.79) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    22 4ky4:E (2.79) BS02 04J 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    23 4ky4:E (2.79) BS03 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    24 4ky4:E (2.79) BS04 1UE 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841 BindingDB: IC50=23nM
    25 4ky4:E (2.79) BS05 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    26 4ky4:F (2.79) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    27 4ky4:F (2.79) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    28 4ky4:F (2.79) BS03 04J 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    29 4ky4:F (2.79) BS04 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    30 4ky4:F (2.79) BS05 1UE 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841 BindingDB: IC50=23nM
    31 4ky4:G (2.79) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    32 4ky4:G (2.79) BS02 04J 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    33 4ky4:G (2.79) BS03 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    34 4ky4:G (2.79) BS04 1UE 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841 BindingDB: IC50=23nM
    35 4ky4:G (2.79) BS05 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    36 4ky4:H (2.79) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    37 4ky4:H (2.79) BS02 04J 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    38 4ky4:H (2.79) BS03 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841
    39 4ky4:H (2.79) BS04 1UE 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 24470841 BindingDB: IC50=23nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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