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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4k4b:A (1.9) BS01 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    2 4k4b:A (1.9) BS02 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    3 4k4b:A (1.9) BS03 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    4 4k4b:A (1.9) BS04 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    5 4k4b:B (1.9) BS01 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    6 4k4b:B (1.9) BS02 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    7 4k4b:B (1.9) BS03 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    8 4k4b:B (1.9) BS04 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    9 4k4b:C (1.9) BS01 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    10 4k4b:C (1.9) BS02 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    11 4k4b:C (1.9) BS03 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    12 4k4b:C (1.9) BS04 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    13 4k4b:D (1.9) BS01 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    14 4k4b:D (1.9) BS02 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    15 4k4b:D (1.9) BS03 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    16 4k4b:D (1.9) BS04 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    17 4k4b:E (1.9) BS01 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    18 4k4b:E (1.9) BS02 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    19 4k4b:E (1.9) BS03 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    20 4k4b:E (1.9) BS04 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    21 4k4b:F (1.9) BS01 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    22 4k4b:F (1.9) BS02 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    23 4k4b:F (1.9) BS03 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    24 4k4b:F (1.9) BS04 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    25 4k4b:G (1.9) BS01 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423
    26 4k4b:G (1.9) BS02 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423
    27 4k4b:G (1.9) BS03 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423
    28 4k4b:G (1.9) BS04 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423
    29 4k4b:G (1.9) BS05 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423
    30 4k4b:H (1.9) BS01 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    31 4k4b:H (1.9) BS02 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    32 4k4b:H (1.9) BS03 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    33 4k4b:H (1.9) BS04 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    34 4k4b:H (1.9) BS05 UOQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=12.2uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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