Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ioc:1 (3.6) BS01 rna ? GO:0000049 ... Q9RSS4 23414806
    2 4ioc:2 (3.6) BS01 rna ? GO:0003735 ... Q9RSH2 23414806
    3 4ioc:3 (3.6) BS01 rna ? GO:0003735 ... Q9RSW6 23414806
    4 4ioc:4 (3.6) BS01 rna ? GO:0003735 ... Q9RSK0 23414806
    5 4ioc:A (3.6) BS01 rna ? GO:0002181 ... Q9RXJ9 23414806
    6 4ioc:B (3.6) BS01 rna ? GO:0003735 ... Q9RXK2 23414806
    7 4ioc:C (3.6) BS01 rna ? GO:0003735 ... Q9RXK1 23414806
    8 4ioc:D (3.6) BS01 rna ? GO:0000049 ... Q9RXJ0 23414806
    9 4ioc:D (3.6) BS02 rna ? GO:0000049 ... Q9RXJ0 23414806
    10 4ioc:E (3.6) BS01 rna ? GO:0002181 ... Q9RSL3 23414806
    11 4ioc:F (3.6) BS01 rna ? GO:0003735 ... Q9RSS7 23414806
    12 4ioc:G (3.6) BS01 rna ? GO:0003729 ... Q9RXY1 23414806
    13 4ioc:H (3.6) BS01 rna ? GO:0003735 ... Q9RXJ2 23414806
    14 4ioc:I (3.6) BS01 rna ? GO:0003735 ... Q9RSK9 23414806
    15 4ioc:J (3.6) BS01 rna ? GO:0000049 ... Q9RXJ5 23414806
    16 4ioc:J (3.6) BS02 rna ? GO:0000049 ... Q9RXJ5 23414806
    17 4ioc:K (3.6) BS01 rna ? GO:0003735 ... Q9RSJ5 23414806
    18 4ioc:L (3.6) BS01 rna ? GO:0003735 ... Q9RSL2 23414806
    19 4ioc:L (3.6) BS02 rna ? GO:0003735 ... Q9RSL2 23414806
    20 4ioc:M (3.6) BS01 rna ? GO:0003735 ... Q9RWB4 23414806
    21 4ioc:N (3.6) BS01 rna ? GO:0000027 ... Q9RSW7 23414806
    22 4ioc:O (3.6) BS01 rna ? GO:0003723 ... Q9RY64 23414806
    23 4ioc:P (3.6) BS01 rna ? GO:0003735 ... Q9RXJ7 23414806
    24 4ioc:Q (3.6) BS01 rna ? GO:0000027 ... Q9RXK0 23414806
    25 4ioc:R (3.6) BS01 rna ? GO:0003723 ... Q9RXJ1 23414806
    26 4ioc:S (3.6) BS01 rna ? GO:0000049 ... Q9RX88 23414806
    27 4ioc:S (3.6) BS02 rna ? GO:0000049 ... Q9RX88 23414806
    28 4ioc:T (3.6) BS01 rna ? GO:0000049 ... Q9RY65 23414806
    29 4ioc:U (3.6) BS01 rna ? GO:0003735 ... Q9RRG8 23414806
    30 4ioc:V (3.6) BS01 rna ? GO:0003735 ... Q9RXJ4 23414806
    31 4ioc:W (3.6) BS01 rna ? GO:0003735 ... Q9RSL0 23414806
    32 4ioc:W (3.6) BS02 rna ? GO:0003735 ... Q9RSL0 23414806
    33 4ioc:Z (3.6) BS01 rna ? GO:0003735 ... P49228 23414806
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218