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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ijm:A (3.352) BS01 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    2 4ijm:A (3.352) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    3 4ijm:A (3.352) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    4 4ijm:A (3.352) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    5 4ijm:A (3.352) BS05 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    6 4ijm:B (3.352) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    7 4ijm:B (3.352) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    8 4ijm:B (3.352) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    9 4ijm:B (3.352) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    10 4ijm:B (3.352) BS05 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    11 4ijm:C (3.352) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    12 4ijm:C (3.352) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    13 4ijm:C (3.352) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    14 4ijm:C (3.352) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    15 4ijm:C (3.352) BS05 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    16 4ijm:D (3.352) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    17 4ijm:D (3.352) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    18 4ijm:D (3.352) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    19 4ijm:D (3.352) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    20 4ijm:D (3.352) BS05 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    21 4ijm:E (3.352) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    22 4ijm:E (3.352) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    23 4ijm:E (3.352) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    24 4ijm:E (3.352) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    25 4ijm:E (3.352) BS05 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    26 4ijm:F (3.352) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    27 4ijm:F (3.352) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    28 4ijm:F (3.352) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    29 4ijm:F (3.352) BS04 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    30 4ijm:F (3.352) BS05 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 23351065
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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