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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4d6u:A (4.09) BS01 peptide ? GO:0005739 ... P31800 25564664
    2 4d6u:B (4.09) BS01 peptide ? GO:0004222 ... P23004 25564664
    3 4d6u:C (4.09) BS01 HEM ? GO:0005739 ... P00157 25564664
    4 4d6u:C (4.09) BS02 HEM ? GO:0005739 ... P00157 25564664
    5 4d6u:C (4.09) BS03 G8U ? GO:0005739 ... P00157 25564664
    6 4d6u:D (4.09) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 25564664
    7 4d6u:N (4.09) BS01 peptide ? GO:0005739 ... P31800 25564664
    8 4d6u:O (4.09) BS01 peptide ? GO:0004222 ... P23004 25564664
    9 4d6u:P (4.09) BS01 HEM ? GO:0005739 ... P00157 25564664
    10 4d6u:P (4.09) BS02 HEM ? GO:0005739 ... P00157 25564664
    11 4d6u:P (4.09) BS03 G8U ? GO:0005739 ... P00157 25564664
    12 4d6u:Q (4.09) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 25564664
    13 4d6u:R (4.09) BS01 FES 7.1.1.8 GO:0005739 ... P13272 25564664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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