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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4d67:A (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    2 4d67:B (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    3 4d67:C (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    4 4d67:C (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    5 4d67:D (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    6 4d67:D (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    7 4d67:E (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    8 4d67:F (9.0) BS01 rna N/A GO:0000463 ... N/A 25601755
    9 4d67:F (9.0) BS02 rna N/A GO:0000463 ... N/A 25601755
    10 4d67:G (9.0) BS01 rna N/A GO:0042254 ... N/A 25601755
    11 4d67:G (9.0) BS02 rna N/A GO:0042254 ... N/A 25601755
    12 4d67:H (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    13 4d67:I (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    14 4d67:I (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    15 4d67:J (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    16 4d67:J (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    17 4d67:L (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    18 4d67:L (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    19 4d67:M (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    20 4d67:N (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    21 4d67:N (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    22 4d67:O (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    23 4d67:P (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    24 4d67:P (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    25 4d67:Q (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    26 4d67:R (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    27 4d67:S (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    28 4d67:S (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    29 4d67:T (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    30 4d67:T (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    31 4d67:U (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    32 4d67:V (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    33 4d67:W (9.0) BS01 rna N/A N/A N/A 25601755
    34 4d67:X (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    35 4d67:X (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    36 4d67:Y (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    37 4d67:Y (9.0) BS02 rna N/A GO:0003723 ... N/A 25601755
    38 4d67:Z (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    39 4d67:a (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    40 4d67:b (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    41 4d67:c (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    42 4d67:d (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    43 4d67:e (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    44 4d67:f (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    45 4d67:g (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    46 4d67:h (9.0) BS01 rna N/A GO:0000463 ... N/A 25601755
    47 4d67:h (9.0) BS02 rna N/A GO:0000463 ... N/A 25601755
    48 4d67:i (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    49 4d67:j (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    50 4d67:j (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    51 4d67:k (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    52 4d67:l (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    53 4d67:l (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    54 4d67:m (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    55 4d67:o (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    56 4d67:p (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    57 4d67:t (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    58 4d67:u (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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