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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3zdg:A (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    2 3zdg:A (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    3 3zdg:B (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    4 3zdg:B (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    5 3zdg:C (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    6 3zdg:D (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    7 3zdg:D (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    8 3zdg:E (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    9 3zdg:E (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    10 3zdg:F (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    11 3zdg:F (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    12 3zdg:G (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    13 3zdg:G (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    14 3zdg:H (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    15 3zdg:H (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    16 3zdg:I (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    17 3zdg:I (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    18 3zdg:J (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    19 3zdg:K (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    PDBbind: -logKd/Ki=7.10, Ki=79nM
    BindingDB: Ki=79nM
    20 3zdg:L (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    PDBbind: -logKd/Ki=7.10, Ki=79nM
    BindingDB: Ki=79nM
    21 3zdg:M (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    22 3zdg:M (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    23 3zdg:N (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    24 3zdg:O (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    25 3zdg:O (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    26 3zdg:P (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    27 3zdg:Q (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    28 3zdg:R (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    29 3zdg:S (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    30 3zdg:S (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    31 3zdg:T (2.48) BS01 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    32 3zdg:T (2.48) BS02 XRX ? GO:0004888 ... P58154 23256554 MOAD: Ki=0.079uM
    BindingDB: Ki=79nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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