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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3rj1:B (4.3) BS01 SE ? GO:0003712 ... P32569 21725323
    2 3rj1:E (4.3) BS01 SE ? GO:0000979 ... P32585 21725323
    3 3rj1:G (4.3) BS01 SE ? GO:0003712 ... P38782 21725323
    4 3rj1:I (4.3) BS01 SE ? GO:0003712 ... P32569 21725323
    5 3rj1:J (4.3) BS01 SE ? GO:0000122 ... P38304 21725323
    6 3rj1:K (4.3) BS01 SE ? GO:0003674 ... P32570 21725323
    7 3rj1:L (4.3) BS01 SE ? GO:0000979 ... P32585 21725323
    8 3rj1:L (4.3) BS02 SE ? GO:0000979 ... P32585 21725323
    9 3rj1:N (4.3) BS01 SE ? GO:0003712 ... P38782 21725323
    10 3rj1:O (4.3) BS01 SE ? GO:0000122 ... Q99278 21725323
    11 3rj1:P (4.3) BS01 SE ? GO:0003712 ... P32569 21725323
    12 3rj1:Q (4.3) BS01 SE ? GO:0000122 ... P38304 21725323
    13 3rj1:S (4.3) BS01 SE ? GO:0000979 ... P32585 21725323
    14 3rj1:T (4.3) BS01 SE ? GO:0001094 ... P34162 21725323
    15 3rj1:U (4.3) BS01 SE ? GO:0003712 ... P38782 21725323
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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