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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3odh:A (2.3) BS01 dna N/A GO:0000287 ... N/A 20833632 PDBbind: Kd=12.9nM
    2 3odh:A (2.3) BS02 dna N/A GO:0000287 ... N/A 20833632 PDBbind: Kd=12.9nM
    3 3odh:A (2.3) BS03 CA N/A GO:0000287 ... N/A 20833632
    4 3odh:A (2.3) BS04 CA N/A GO:0000287 ... N/A 20833632
    5 3odh:B (2.3) BS01 dna N/A GO:0000287 ... N/A 20833632 PDBbind: Kd=12.9nM
    6 3odh:B (2.3) BS02 dna N/A GO:0000287 ... N/A 20833632 PDBbind: Kd=12.9nM
    7 3odh:B (2.3) BS03 CA N/A GO:0000287 ... N/A 20833632
    8 3odh:E (2.3) BS01 dna N/A GO:0000287 ... N/A 20833632 PDBbind: Kd=12.9nM
    9 3odh:E (2.3) BS02 dna N/A GO:0000287 ... N/A 20833632 PDBbind: Kd=12.9nM
    10 3odh:E (2.3) BS03 CA N/A GO:0000287 ... N/A 20833632
    11 3odh:F (2.3) BS01 dna N/A GO:0000287 ... N/A 20833632 PDBbind: Kd=12.9nM
    12 3odh:F (2.3) BS02 dna N/A GO:0000287 ... N/A 20833632 PDBbind: Kd=12.9nM
    13 3odh:F (2.3) BS03 CA N/A GO:0000287 ... N/A 20833632
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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