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BioLiP
Download all results in tab-seperated text for 118 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ko0:A (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    2 3ko0:A (2.3) BS02 CA ? GO:0001837 ... P26447 20421509
    3 3ko0:A (2.3) BS03 CA ? GO:0001837 ... P26447 20421509
    4 3ko0:A (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    5 3ko0:A (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    6 3ko0:A (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    7 3ko0:A (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    8 3ko0:B (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    9 3ko0:B (2.3) BS02 CA ? GO:0001837 ... P26447 20421509
    10 3ko0:B (2.3) BS03 CA ? GO:0001837 ... P26447 20421509
    11 3ko0:B (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    12 3ko0:B (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    13 3ko0:B (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    14 3ko0:C (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    15 3ko0:C (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    16 3ko0:C (2.3) BS03 CA ? GO:0001837 ... P26447 20421509
    17 3ko0:C (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    18 3ko0:C (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    19 3ko0:C (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    20 3ko0:C (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    21 3ko0:D (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    22 3ko0:D (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    23 3ko0:D (2.3) BS03 CA ? GO:0001837 ... P26447 20421509
    24 3ko0:D (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    25 3ko0:D (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    26 3ko0:D (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    27 3ko0:D (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    28 3ko0:E (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    29 3ko0:E (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    30 3ko0:E (2.3) BS03 CA ? GO:0001837 ... P26447 20421509
    31 3ko0:E (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    32 3ko0:E (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    33 3ko0:E (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    34 3ko0:E (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    35 3ko0:F (2.3) BS01 CA ? GO:0001837 ... P26447 20421509
    36 3ko0:F (2.3) BS02 CA ? GO:0001837 ... P26447 20421509
    37 3ko0:F (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    38 3ko0:F (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    39 3ko0:F (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    40 3ko0:G (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    41 3ko0:G (2.3) BS02 CA ? GO:0001837 ... P26447 20421509
    42 3ko0:G (2.3) BS03 CA ? GO:0001837 ... P26447 20421509
    43 3ko0:G (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    44 3ko0:H (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    45 3ko0:H (2.3) BS02 CA ? GO:0001837 ... P26447 20421509
    46 3ko0:H (2.3) BS03 CA ? GO:0001837 ... P26447 20421509
    47 3ko0:H (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    48 3ko0:H (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    49 3ko0:I (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    50 3ko0:I (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    51 3ko0:I (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    52 3ko0:I (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    53 3ko0:I (2.3) BS05 CA ? GO:0001837 ... P26447 20421509
    54 3ko0:I (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    55 3ko0:J (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    56 3ko0:J (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    57 3ko0:J (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    58 3ko0:J (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    59 3ko0:J (2.3) BS05 CA ? GO:0001837 ... P26447 20421509
    60 3ko0:J (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    61 3ko0:K (2.3) BS01 CA ? GO:0001837 ... P26447 20421509
    62 3ko0:K (2.3) BS02 CA ? GO:0001837 ... P26447 20421509
    63 3ko0:K (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    64 3ko0:K (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    65 3ko0:K (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    66 3ko0:L (2.3) BS01 CA ? GO:0001837 ... P26447 20421509
    67 3ko0:L (2.3) BS02 CA ? GO:0001837 ... P26447 20421509
    68 3ko0:L (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    69 3ko0:L (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    70 3ko0:L (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    71 3ko0:L (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    72 3ko0:M (2.3) BS01 CA ? GO:0001837 ... P26447 20421509
    73 3ko0:M (2.3) BS02 CA ? GO:0001837 ... P26447 20421509
    74 3ko0:M (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    75 3ko0:M (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    76 3ko0:N (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    77 3ko0:N (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    78 3ko0:N (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    79 3ko0:N (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    80 3ko0:N (2.3) BS05 CA ? GO:0001837 ... P26447 20421509
    81 3ko0:N (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    82 3ko0:N (2.3) BS07 TFP ? GO:0001837 ... P26447 20421509
    83 3ko0:O (2.3) BS01 CA ? GO:0001837 ... P26447 20421509
    84 3ko0:O (2.3) BS02 CA ? GO:0001837 ... P26447 20421509
    85 3ko0:O (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    86 3ko0:O (2.3) BS04 TFP ? GO:0001837 ... P26447 20421509
    87 3ko0:O (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    88 3ko0:O (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    89 3ko0:P (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    90 3ko0:P (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    91 3ko0:P (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    92 3ko0:P (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    93 3ko0:P (2.3) BS05 CA ? GO:0001837 ... P26447 20421509
    94 3ko0:P (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    95 3ko0:Q (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    96 3ko0:Q (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    97 3ko0:Q (2.3) BS03 CA ? GO:0001837 ... P26447 20421509
    98 3ko0:Q (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    99 3ko0:Q (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    100 3ko0:Q (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    101 3ko0:R (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    102 3ko0:R (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    103 3ko0:R (2.3) BS03 CA ? GO:0001837 ... P26447 20421509
    104 3ko0:R (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    105 3ko0:R (2.3) BS05 TFP ? GO:0001837 ... P26447 20421509
    106 3ko0:R (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    107 3ko0:S (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    108 3ko0:S (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    109 3ko0:S (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    110 3ko0:S (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    111 3ko0:S (2.3) BS05 CA ? GO:0001837 ... P26447 20421509
    112 3ko0:S (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    113 3ko0:T (2.3) BS01 TFP ? GO:0001837 ... P26447 20421509
    114 3ko0:T (2.3) BS02 TFP ? GO:0001837 ... P26447 20421509
    115 3ko0:T (2.3) BS03 TFP ? GO:0001837 ... P26447 20421509
    116 3ko0:T (2.3) BS04 CA ? GO:0001837 ... P26447 20421509
    117 3ko0:T (2.3) BS05 CA ? GO:0001837 ... P26447 20421509
    118 3ko0:T (2.3) BS06 TFP ? GO:0001837 ... P26447 20421509
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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