Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jbu:0 (3.64) BS01 rna ? GO:0000027 ... P0A7M2 26670735
    2 3jbu:1 (3.64) BS01 rna ? GO:0000027 ... P0A7M6 26670735
    3 3jbu:2 (3.64) BS01 rna ? GO:0000027 ... P0AG51 26670735
    4 3jbu:2 (3.64) BS02 rna ? GO:0000027 ... P0AG51 26670735
    5 3jbu:3 (3.64) BS01 rna ? GO:0000027 ... P0A7N4 26670735
    6 3jbu:4 (3.64) BS01 rna ? GO:0000027 ... P0A7N9 26670735
    7 3jbu:6 (3.64) BS01 rna ? GO:0002181 ... P0A7P5 26670735
    8 3jbu:7 (3.64) BS01 rna ? GO:0002181 ... P0A7Q1 26670735
    9 3jbu:8 (3.64) BS01 rna ? GO:0002181 ... P0A7Q6 26670735
    10 3jbu:B (3.64) BS01 rna ? GO:0000028 ... P0A7V0 26670735
    11 3jbu:C (3.64) BS01 rna ? GO:0000028 ... P0A7V3 26670735
    12 3jbu:D (3.64) BS01 rna ? GO:0000028 ... P0A7V8 26670735
    13 3jbu:E (3.64) BS01 rna ? GO:0000028 ... P0A7W1 26670735
    14 3jbu:F (3.64) BS01 rna ? GO:0002181 ... P02358 26670735
    15 3jbu:G (3.64) BS01 rna ? GO:0003723 ... P02359 26670735
    16 3jbu:H (3.64) BS01 rna ? GO:0000028 ... P0A7W7 26670735
    17 3jbu:I (3.64) BS01 rna ? GO:0000049 ... P0A7X3 26670735
    18 3jbu:I (3.64) BS02 rna ? GO:0000049 ... P0A7X3 26670735
    19 3jbu:J (3.64) BS01 rna ? GO:0000049 ... P0A7R5 26670735
    20 3jbu:K (3.64) BS01 rna ? GO:0002181 ... P0A7R9 26670735
    21 3jbu:L (3.64) BS01 rna ? GO:0000049 ... P0A7S3 26670735
    22 3jbu:M (3.64) BS01 rna ? GO:0000049 ... P0A7S9 26670735
    23 3jbu:M (3.64) BS02 rna ? GO:0000049 ... P0A7S9 26670735
    24 3jbu:N (3.64) BS01 rna ? GO:0000028 ... P0AG59 26670735
    25 3jbu:O (3.64) BS01 rna ? GO:0000028 ... P0ADZ4 26670735
    26 3jbu:O (3.64) BS02 rna ? GO:0000028 ... P0ADZ4 26670735
    27 3jbu:P (3.64) BS01 rna ? GO:0000028 ... P0A7T3 26670735
    28 3jbu:Q (3.64) BS01 rna ? GO:0000028 ... P0AG63 26670735
    29 3jbu:R (3.64) BS01 rna ? GO:0002181 ... P0A7T7 26670735
    30 3jbu:S (3.64) BS01 rna ? GO:0000028 ... P0A7U3 26670735
    31 3jbu:T (3.64) BS01 rna ? GO:0000028 ... P0A7U7 26670735
    32 3jbu:U (3.64) BS01 rna ? GO:0000028 ... P68679 26670735
    33 3jbu:c (3.64) BS01 rna ? GO:0000027 ... P60422 26670735
    34 3jbu:d (3.64) BS01 rna ? GO:0000027 ... P60438 26670735
    35 3jbu:e (3.64) BS01 rna ? GO:0001070 ... P60723 26670735
    36 3jbu:f (3.64) BS01 rna ? GO:0000027 ... P62399 26670735
    37 3jbu:f (3.64) BS02 rna ? GO:0000027 ... P62399 26670735
    38 3jbu:f (3.64) BS03 rna ? GO:0000027 ... P62399 26670735
    39 3jbu:g (3.64) BS01 rna ? GO:0000027 ... P0AG55 26670735
    40 3jbu:h (3.64) BS01 rna ? GO:0002181 ... P0A7R1 26670735
    41 3jbu:j (3.64) BS01 rna ? GO:0002181 ... P0AA10 26670735
    42 3jbu:k (3.64) BS01 rna ? GO:0002181 ... P0ADY3 26670735
    43 3jbu:l (3.64) BS01 rna ? GO:0002181 ... P02413 26670735
    44 3jbu:m (3.64) BS01 rna ? GO:0000027 ... P0ADY7 26670735
    45 3jbu:m (3.64) BS02 rna ? GO:0000027 ... P0ADY7 26670735
    46 3jbu:n (3.64) BS01 rna ? GO:0000027 ... P0AG44 26670735
    47 3jbu:o (3.64) BS01 rna ? GO:0002181 ... P0C018 26670735
    48 3jbu:o (3.64) BS02 rna ? GO:0002181 ... P0C018 26670735
    49 3jbu:p (3.64) BS01 rna ? GO:0000027 ... P0A7K6 26670735
    50 3jbu:p (3.64) BS02 rna ? GO:0000027 ... P0A7K6 26670735
    51 3jbu:q (3.64) BS01 rna ? GO:0000027 ... P0A7L3 26670735
    52 3jbu:r (3.64) BS01 rna ? GO:0002181 ... P0AG48 26670735
    53 3jbu:s (3.64) BS01 peptide ? GO:0002181 ... P61175 26670735
    54 3jbu:s (3.64) BS02 rna ? GO:0002181 ... P61175 26670735
    55 3jbu:t (3.64) BS01 rna ? GO:0000027 ... P0ADZ0 26670735
    56 3jbu:u (3.64) BS01 rna ? GO:0000027 ... P60624 26670735
    57 3jbu:w (3.64) BS01 rna ? GO:0000027 ... P68919 26670735
    58 3jbu:y (3.64) BS01 rna ? GO:0000027 ... P0A7L8 26670735
    59 3jbu:y (3.64) BS02 rna ? GO:0000027 ... P0A7L8 26670735
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218