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BioLiP
Download all results in tab-seperated text for 92 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jbo:1 (5.8) BS01 rna ? GO:0003735 ... Q8I3R6 26432834
    2 3jbo:2 (5.8) BS01 rna ? N/A Q8ILN8 26432834
    3 3jbo:3 (5.8) BS01 rna ? GO:0003735 ... O96258 26432834
    4 3jbo:4 (5.8) BS01 rna ? GO:0000028 ... Q8IEN2 26432834
    5 3jbo:5 (5.8) BS01 rna ? GO:0000028 ... Q8IKL9 26432834
    6 3jbo:6 (5.8) BS01 rna ? GO:0003735 ... O96269 26432834
    7 3jbo:A0 (5.8) BS01 rna ? N/A Q8IEM3 26432834
    8 3jbo:A1 (5.8) BS01 rna ? GO:0003735 ... Q8IKM5 26432834
    9 3jbo:A2 (5.8) BS01 rna ? GO:0005840 ... Q8IHU0 26432834
    10 3jbo:A3 (5.8) BS01 rna ? GO:0000463 ... Q8IIB4 26432834
    11 3jbo:A3 (5.8) BS02 rna ? GO:0000463 ... Q8IIB4 26432834
    12 3jbo:A4 (5.8) BS01 rna ? GO:0002181 ... C6S3J6 26432834
    13 3jbo:A5 (5.8) BS01 rna ? GO:0000463 ... O97250 26432834
    14 3jbo:A5 (5.8) BS02 rna ? GO:0000463 ... O97250 26432834
    15 3jbo:A6 (5.8) BS01 rna ? GO:0003723 ... Q8IJK8 26432834
    16 3jbo:A7 (5.8) BS01 rna ? GO:0003735 ... Q8I463 26432834
    17 3jbo:A8 (5.8) BS01 rna ? GO:0003735 ... Q8I3B0 26432834
    18 3jbo:A9 (5.8) BS01 rna ? GO:0003735 ... Q8IHT9 26432834
    19 3jbo:AD (5.8) BS01 rna ? GO:0002181 ... Q8I3T9 26432834
    20 3jbo:AD (5.8) BS02 rna ? GO:0002181 ... Q8I3T9 26432834
    21 3jbo:AE (5.8) BS01 rna ? GO:0003723 ... Q8IJC6 26432834
    22 3jbo:AF (5.8) BS01 rna ? GO:0003723 ... Q8I431 26432834
    23 3jbo:AF (5.8) BS02 rna ? GO:0003723 ... Q8I431 26432834
    24 3jbo:AG (5.8) BS01 rna ? GO:0003723 ... Q8IBQ6 26432834
    25 3jbo:AG (5.8) BS02 rna ? GO:0003723 ... Q8IBQ6 26432834
    26 3jbo:AH (5.8) BS01 rna ? GO:0002181 ... Q8IE85 26432834
    27 3jbo:AI (5.8) BS01 rna N/A GO:0003735 ... N/A 26432834
    28 3jbo:AJ (5.8) BS01 rna ? N/A Q8ILL2 26432834
    29 3jbo:AK (5.8) BS01 rna ? GO:0003729 ... Q8IJZ7 26432834
    30 3jbo:AL (5.8) BS01 rna ? GO:0003723 ... Q8IAX6 26432834
    31 3jbo:AM (5.8) BS01 rna ? GO:0003735 ... Q8IE09 26432834
    32 3jbo:AM (5.8) BS02 rna ? GO:0003735 ... Q8IE09 26432834
    33 3jbo:AN (5.8) BS01 rna ? GO:0003723 ... Q8ILE8 26432834
    34 3jbo:AO (5.8) BS01 rna ? GO:0003735 ... C6KT23 26432834
    35 3jbo:AP (5.8) BS01 rna ? GO:0002181 ... C0H4A6 26432834
    36 3jbo:AP (5.8) BS02 rna ? GO:0002181 ... C0H4A6 26432834
    37 3jbo:AQ (5.8) BS01 rna ? GO:0000027 ... Q8ILV2 26432834
    38 3jbo:AQ (5.8) BS02 rna ? GO:0000027 ... Q8ILV2 26432834
    39 3jbo:AR (5.8) BS01 rna ? GO:0000027 ... Q8ILL3 26432834
    40 3jbo:AR (5.8) BS02 rna ? GO:0000027 ... Q8ILL3 26432834
    41 3jbo:AS (5.8) BS01 rna ? GO:0003723 ... C0H5G3 26432834
    42 3jbo:AT (5.8) BS01 rna ? GO:0003723 ... C6KSY6 26432834
    43 3jbo:AT (5.8) BS02 rna ? GO:0003723 ... C6KSY6 26432834
    44 3jbo:AU (5.8) BS01 rna ? GO:0003735 ... Q8IDS6 26432834
    45 3jbo:AU (5.8) BS02 rna ? GO:0003735 ... Q8IDS6 26432834
    46 3jbo:AV (5.8) BS01 rna ? GO:0003735 ... Q8ILK3 26432834
    47 3jbo:AV (5.8) BS02 rna ? GO:0003735 ... Q8ILK3 26432834
    48 3jbo:AW (5.8) BS01 rna ? GO:0003735 ... Q8IDI5 26432834
    49 3jbo:AW (5.8) BS02 rna ? GO:0003735 ... Q8IDI5 26432834
    50 3jbo:AX (5.8) BS01 rna ? GO:0003735 ... Q8IB51 26432834
    51 3jbo:AY (5.8) BS01 rna ? GO:0003735 ... Q8IE82 26432834
    52 3jbo:AY (5.8) BS02 rna ? GO:0003735 ... Q8IE82 26432834
    53 3jbo:AZ (5.8) BS01 rna ? GO:0002181 ... O77364 26432834
    54 3jbo:AZ (5.8) BS02 rna ? GO:0002181 ... O77364 26432834
    55 3jbo:Aa (5.8) BS01 rna ? GO:0003735 ... Q8IBY4 26432834
    56 3jbo:Ab (5.8) BS01 rna ? GO:0002181 ... Q8I713 26432834
    57 3jbo:Ac (5.8) BS01 rna ? GO:0003723 ... C0H4L5 26432834
    58 3jbo:Ac (5.8) BS02 rna ? GO:0003723 ... C0H4L5 26432834
    59 3jbo:Ad (5.8) BS01 rna ? GO:0003735 ... Q8II62 26432834
    60 3jbo:Ae (5.8) BS01 rna ? GO:0003735 ... C0H4H3 26432834
    61 3jbo:Ae (5.8) BS02 rna ? GO:0003735 ... C0H4H3 26432834
    62 3jbo:Af (5.8) BS01 rna ? GO:0003735 ... Q8ID50 26432834
    63 3jbo:Ag (5.8) BS01 rna ? GO:0003700 ... C6S3G4 26432834
    64 3jbo:Ah (5.8) BS01 rna ? GO:0003735 ... O96184 26432834
    65 3jbo:Ah (5.8) BS02 rna ? GO:0003735 ... O96184 26432834
    66 3jbo:Ai (5.8) BS01 rna ? GO:0003735 ... O97231 26432834
    67 3jbo:Ai (5.8) BS02 rna ? GO:0003735 ... O97231 26432834
    68 3jbo:B (5.8) BS01 rna ? GO:0003735 ... O97313 26432834
    69 3jbo:C (5.8) BS01 rna ? GO:0003735 ... Q8IJD4 26432834
    70 3jbo:D (5.8) BS01 rna ? GO:0003723 ... Q8IKH8 26432834
    71 3jbo:E (5.8) BS01 rna ? GO:0003723 ... Q8I3R0 26432834
    72 3jbo:F (5.8) BS01 rna ? GO:0003723 ... Q8IIU8 26432834
    73 3jbo:G (5.8) BS01 rna ? GO:0003723 ... Q8IL02 26432834
    74 3jbo:H (5.8) BS01 rna ? GO:0003735 ... Q8IDR9 26432834
    75 3jbo:I (5.8) BS01 rna ? GO:0000028 ... Q8IBN5 26432834
    76 3jbo:J (5.8) BS01 rna ? GO:0003735 ... Q8IET7 26432834
    77 3jbo:K (5.8) BS01 rna ? GO:0003735 ... O77395 26432834
    78 3jbo:L (5.8) BS01 rna ? GO:0000462 ... Q8IM10 26432834
    79 3jbo:L (5.8) BS02 rna ? GO:0000462 ... Q8IM10 26432834
    80 3jbo:M (5.8) BS01 rna ? GO:0000462 ... Q8IAX5 26432834
    81 3jbo:N (5.8) BS01 rna ? GO:0003735 ... Q8IK02 26432834
    82 3jbo:O (5.8) BS01 rna ? N/A Q8IBQ5 26432834
    83 3jbo:P (5.8) BS01 rna N/A GO:0003735 ... N/A 26432834
    84 3jbo:Q (5.8) BS01 rna ? GO:0003735 ... O97248 26432834
    85 3jbo:S (5.8) BS01 rna ? GO:0003676 ... Q8IIA2 26432834
    86 3jbo:T (5.8) BS01 rna ? GO:0003735 ... C0H4K8 26432834
    87 3jbo:U (5.8) BS01 rna ? GO:0003735 ... Q8IDB0 26432834
    88 3jbo:U (5.8) BS02 rna ? GO:0003735 ... Q8IDB0 26432834
    89 3jbo:V (5.8) BS01 rna ? GO:0003735 ... O77381 26432834
    90 3jbo:W (5.8) BS01 rna ? GO:0003735 ... Q8I502 26432834
    91 3jbo:X (5.8) BS01 rna ? GO:0003723 ... C0H5C2 26432834
    92 3jbo:Y (5.8) BS01 rna ? GO:0000028 ... Q8IFP2 26432834
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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