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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jaj:2 (3.75) BS01 rna N/A N/A N/A 26158507
    2 3jaj:6 (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    3 3jaj:9 (3.75) BS01 rna N/A GO:0006614 ... N/A 26158507
    4 3jaj:A (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    5 3jaj:B (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    6 3jaj:C (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    7 3jaj:C (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    8 3jaj:D (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    9 3jaj:D (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    10 3jaj:E (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    11 3jaj:F (3.75) BS01 rna N/A GO:0000463 ... N/A 26158507
    12 3jaj:F (3.75) BS02 rna N/A GO:0000463 ... N/A 26158507
    13 3jaj:G (3.75) BS01 rna N/A GO:0042254 ... N/A 26158507
    14 3jaj:G (3.75) BS02 rna N/A GO:0042254 ... N/A 26158507
    15 3jaj:H (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    16 3jaj:I (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    17 3jaj:I (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    18 3jaj:J (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    19 3jaj:J (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    20 3jaj:J (3.75) BS03 rna N/A GO:0003735 ... N/A 26158507
    21 3jaj:K (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    22 3jaj:K (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    23 3jaj:L (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    24 3jaj:L (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    25 3jaj:M (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    26 3jaj:N (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    27 3jaj:N (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    28 3jaj:O (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    29 3jaj:P (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    30 3jaj:P (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    31 3jaj:Q (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    32 3jaj:R (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    33 3jaj:R (3.75) BS02 rna N/A GO:0003723 ... N/A 26158507
    34 3jaj:S (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    35 3jaj:S (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    36 3jaj:S1 (3.75) BS01 rna N/A GO:0006614 ... N/A 26158507
    37 3jaj:S4 (3.75) BS01 rna N/A GO:0005786 ... N/A 26158507
    38 3jaj:S4 (3.75) BS02 rna N/A GO:0005786 ... N/A 26158507
    39 3jaj:SA (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    40 3jaj:SB (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    41 3jaj:SC (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    42 3jaj:SD (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    43 3jaj:SE (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    44 3jaj:SF (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    45 3jaj:SG (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    46 3jaj:SH (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    47 3jaj:SI (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    48 3jaj:SJ (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    49 3jaj:SK (3.75) BS01 rna N/A N/A N/A 26158507
    50 3jaj:SL (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    51 3jaj:SL (3.75) BS02 MG N/A GO:0003735 ... N/A 26158507
    52 3jaj:SM (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    53 3jaj:SN (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    54 3jaj:SO (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    55 3jaj:SP (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    56 3jaj:SQ (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    57 3jaj:SR (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    58 3jaj:SS (3.75) BS01 rna N/A GO:0003676 ... N/A 26158507
    59 3jaj:ST (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    60 3jaj:SU (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    61 3jaj:SW (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    62 3jaj:SX (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    63 3jaj:SY (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    64 3jaj:SZ (3.75) BS01 rna N/A N/A N/A 26158507
    65 3jaj:Sa (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    66 3jaj:Sa (3.75) BS02 ZN N/A GO:0003735 ... N/A 26158507
    67 3jaj:Sb (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    68 3jaj:Sc (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    69 3jaj:Sd (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    70 3jaj:Se (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    71 3jaj:Sf (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    72 3jaj:Sg (3.75) BS01 rna N/A GO:0043022 ... N/A 26158507
    73 3jaj:T (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    74 3jaj:T (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    75 3jaj:U (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    76 3jaj:V (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    77 3jaj:W (3.75) BS01 rna N/A N/A N/A 26158507
    78 3jaj:X (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    79 3jaj:X (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    80 3jaj:Y (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    81 3jaj:Y (3.75) BS02 rna N/A GO:0003723 ... N/A 26158507
    82 3jaj:Z (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    83 3jaj:a (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    84 3jaj:b (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    85 3jaj:c (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    86 3jaj:d (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    87 3jaj:e (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    88 3jaj:f (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    89 3jaj:g (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    90 3jaj:h (3.75) BS01 rna N/A GO:0000463 ... N/A 26158507
    91 3jaj:h (3.75) BS02 rna N/A GO:0000463 ... N/A 26158507
    92 3jaj:i (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    93 3jaj:j (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    94 3jaj:j (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    95 3jaj:j (3.75) BS03 ZN N/A GO:0003735 ... N/A 26158507
    96 3jaj:k (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    97 3jaj:l (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    98 3jaj:l (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    99 3jaj:m (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    100 3jaj:m (3.75) BS02 ZN N/A GO:0003735 ... N/A 26158507
    101 3jaj:o (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    102 3jaj:o (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    103 3jaj:o (3.75) BS03 ZN N/A GO:0003735 ... N/A 26158507
    104 3jaj:p (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    105 3jaj:q (3.75) BS01 rna N/A N/A N/A 26158507
    106 3jaj:r (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    107 3jaj:z (3.75) BS01 rna N/A GO:0003924 ... N/A 26158507
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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