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BioLiP
Download all results in tab-seperated text for 103 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j7p:4 (3.5) BS01 rna N/A GO:0003924 ... N/A 24930395
    2 3j7p:4 (3.5) BS02 rna N/A GO:0003924 ... N/A 24930395
    3 3j7p:A (3.5) BS01 rna ? GO:0003723 ... F2Z567 24930395
    4 3j7p:B (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    5 3j7p:C (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    6 3j7p:C (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    7 3j7p:D (3.5) BS01 rna ? GO:0003735 ... A0A8D0MVZ5 24930395
    8 3j7p:D (3.5) BS02 rna ? GO:0003735 ... A0A8D0MVZ5 24930395
    9 3j7p:E (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    10 3j7p:F (3.5) BS01 rna N/A GO:0000463 ... N/A 24930395
    11 3j7p:F (3.5) BS02 rna N/A GO:0000463 ... N/A 24930395
    12 3j7p:G (3.5) BS01 rna N/A GO:0042254 ... N/A 24930395
    13 3j7p:G (3.5) BS02 rna N/A GO:0042254 ... N/A 24930395
    14 3j7p:H (3.5) BS01 rna ? GO:0003735 ... I3LP78 24930395
    15 3j7p:I (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    16 3j7p:I (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    17 3j7p:J (3.5) BS01 rna ? GO:0003723 ... Q29205 24930395
    18 3j7p:J (3.5) BS02 rna ? GO:0003723 ... Q29205 24930395
    19 3j7p:K (3.5) BS01 rna ? GO:0003735 ... Q6QAS5 24930395
    20 3j7p:L (3.5) BS01 rna ? GO:0003735 ... I3LSD3 24930395
    21 3j7p:L (3.5) BS02 rna ? GO:0003735 ... I3LSD3 24930395
    22 3j7p:M (3.5) BS01 rna ? GO:0003723 ... A1XQU3 24930395
    23 3j7p:N (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    24 3j7p:N (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    25 3j7p:O (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    26 3j7p:P (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    27 3j7p:P (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    28 3j7p:Q (3.5) BS01 rna ? GO:0002181 ... Q95342 24930395
    29 3j7p:R (3.5) BS01 rna ? GO:0003723 ... F2Z546 24930395
    30 3j7p:R (3.5) BS02 rna ? GO:0003723 ... F2Z546 24930395
    31 3j7p:S (3.5) BS01 rna ? GO:0003735 ... A0A4X1UAP0 24930395
    32 3j7p:S (3.5) BS02 rna ? GO:0003735 ... A0A4X1UAP0 24930395
    33 3j7p:SA (3.5) BS01 rna ? GO:0000028 ... Q4GWZ2 24930395
    34 3j7p:SB (3.5) BS01 rna ? GO:0003735 ... B6V8C8 24930395
    35 3j7p:SB (3.5) BS02 rna ? GO:0003735 ... B6V8C8 24930395
    36 3j7p:SC (3.5) BS01 rna N/A GO:0003723 ... N/A 24930395
    37 3j7p:SD (3.5) BS01 rna 4.2.99.18 GO:0003677 ... Q0Z8U2 24930395
    38 3j7p:SE (3.5) BS01 rna N/A GO:0003723 ... N/A 24930395
    39 3j7p:SF (3.5) BS01 rna ? GO:0003723 ... F2Z5E6 24930395
    40 3j7p:SG (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    41 3j7p:SH (3.5) BS01 rna ? GO:0003735 ... I3L5B2 24930395
    42 3j7p:SI (3.5) BS01 rna ? GO:0000462 ... F2Z5F5 24930395
    43 3j7p:SI (3.5) BS02 rna ? GO:0000462 ... F2Z5F5 24930395
    44 3j7p:SJ (3.5) BS01 rna N/A GO:0003723 ... N/A 24930395
    45 3j7p:SK (3.5) BS01 rna ? N/A F1RZ28 24930395
    46 3j7p:SL (3.5) BS01 rna ? GO:0003735 ... F2Z4Y8 24930395
    47 3j7p:SL (3.5) BS02 MG ? GO:0003735 ... F2Z4Y8 24930395
    48 3j7p:SM (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    49 3j7p:SN (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    50 3j7p:SO (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    51 3j7p:SP (3.5) BS01 rna ? GO:0000028 ... P62844 24930395
    52 3j7p:SQ (3.5) BS01 rna ? GO:0000462 ... Q29201 24930395
    53 3j7p:SR (3.5) BS01 rna ? GO:0003735 ... Q6QAP7 24930395
    54 3j7p:SS (3.5) BS01 rna ? GO:0003676 ... P62272 24930395
    55 3j7p:ST (3.5) BS01 rna ? GO:0003735 ... F1RGG1 24930395
    56 3j7p:SU (3.5) BS01 rna ? GO:0003723 ... A1XQU9 24930395
    57 3j7p:SW (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    58 3j7p:SX (3.5) BS01 rna ? GO:0002181 ... Q6SA96 24930395
    59 3j7p:SY (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    60 3j7p:SZ (3.5) BS01 rna N/A N/A N/A 24930395
    61 3j7p:Sa (3.5) BS01 rna ? GO:0002181 ... P49171 24930395
    62 3j7p:Sa (3.5) BS02 ZN ? GO:0002181 ... P49171 24930395
    63 3j7p:Sb (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    64 3j7p:Sc (3.5) BS01 rna ? GO:0000028 ... Q6QAT1 24930395
    65 3j7p:Sd (3.5) BS01 rna ? GO:0002181 ... Q6QAP6 24930395
    66 3j7p:Se (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    67 3j7p:Sf (3.5) BS01 rna ? GO:0003735 ... F2Z5U0 24930395
    68 3j7p:Sg (3.5) BS01 rna ? GO:0001891 ... P63246 24930395
    69 3j7p:T (3.5) BS01 rna ? GO:0003735 ... P49666 24930395
    70 3j7p:T (3.5) BS02 rna ? GO:0003735 ... P49666 24930395
    71 3j7p:U (3.5) BS01 rna ? GO:0002181 ... P67985 24930395
    72 3j7p:V (3.5) BS01 rna ? GO:0000122 ... P62831 24930395
    73 3j7p:V (3.5) BS02 rna ? GO:0000122 ... P62831 24930395
    74 3j7p:W (3.5) BS01 rna N/A N/A N/A 24930395
    75 3j7p:X (3.5) BS01 rna ? GO:0003735 ... F2Z522 24930395
    76 3j7p:X (3.5) BS02 rna ? GO:0003735 ... F2Z522 24930395
    77 3j7p:Y (3.5) BS01 rna ? GO:0002181 ... I3L7Y1 24930395
    78 3j7p:Y (3.5) BS02 rna ? GO:0002181 ... I3L7Y1 24930395
    79 3j7p:Z (3.5) BS01 rna ? GO:0003735 ... A1XQU5 24930395
    80 3j7p:a (3.5) BS01 rna ? GO:0003735 ... F1RGC0 24930395
    81 3j7p:b (3.5) BS01 rna ? GO:0002181 ... Q95281 24930395
    82 3j7p:c (3.5) BS01 rna ? GO:0003723 ... F2Z554 24930395
    83 3j7p:d (3.5) BS01 rna ? GO:0002181 ... P62901 24930395
    84 3j7p:e (3.5) BS01 rna ? GO:0002181 ... Q6QAT0 24930395
    85 3j7p:f (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    86 3j7p:g (3.5) BS01 rna ? GO:0003735 ... Q29223 24930395
    87 3j7p:h (3.5) BS01 rna ? GO:0000463 ... Q29361 24930395
    88 3j7p:h (3.5) BS02 rna ? GO:0000463 ... Q29361 24930395
    89 3j7p:i (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    90 3j7p:j (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    91 3j7p:j (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    92 3j7p:j (3.5) BS03 ZN N/A GO:0003735 ... N/A 24930395
    93 3j7p:k (3.5) BS01 rna ? GO:0003735 ... A0A4X1VLH7 24930395
    94 3j7p:l (3.5) BS01 rna ? GO:0002181 ... K7GP63 24930395
    95 3j7p:l (3.5) BS02 rna ? GO:0002181 ... K7GP63 24930395
    96 3j7p:m (3.5) BS01 rna ? GO:0003735 ... P63053 24930395
    97 3j7p:m (3.5) BS02 ZN ? GO:0003735 ... P63053 24930395
    98 3j7p:o (3.5) BS01 rna ? GO:0003674 ... P83884 24930395
    99 3j7p:o (3.5) BS02 ZN ? GO:0003674 ... P83884 24930395
    100 3j7p:p (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    101 3j7p:p (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    102 3j7p:q (3.5) BS01 rna N/A N/A N/A 24930395
    103 3j7p:r (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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