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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j7o:A (3.4) BS01 rna ? GO:0003723 ... F2Z567 24930395
    2 3j7o:B (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    3 3j7o:C (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    4 3j7o:C (3.4) BS02 rna N/A GO:0003735 ... N/A 24930395
    5 3j7o:D (3.4) BS01 rna ? GO:0003735 ... A0A8D0MVZ5 24930395
    6 3j7o:D (3.4) BS02 rna ? GO:0003735 ... A0A8D0MVZ5 24930395
    7 3j7o:E (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    8 3j7o:F (3.4) BS01 rna N/A GO:0000463 ... N/A 24930395
    9 3j7o:F (3.4) BS02 rna N/A GO:0000463 ... N/A 24930395
    10 3j7o:G (3.4) BS01 rna N/A GO:0042254 ... N/A 24930395
    11 3j7o:G (3.4) BS02 rna N/A GO:0042254 ... N/A 24930395
    12 3j7o:H (3.4) BS01 rna ? GO:0003735 ... I3LP78 24930395
    13 3j7o:I (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    14 3j7o:I (3.4) BS02 rna N/A GO:0003735 ... N/A 24930395
    15 3j7o:J (3.4) BS01 rna ? GO:0003723 ... Q29205 24930395
    16 3j7o:J (3.4) BS02 rna ? GO:0003723 ... Q29205 24930395
    17 3j7o:L (3.4) BS01 rna ? GO:0003735 ... I3LSD3 24930395
    18 3j7o:L (3.4) BS02 rna ? GO:0003735 ... I3LSD3 24930395
    19 3j7o:M (3.4) BS01 rna ? GO:0003723 ... A1XQU3 24930395
    20 3j7o:N (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    21 3j7o:N (3.4) BS02 rna N/A GO:0003735 ... N/A 24930395
    22 3j7o:O (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    23 3j7o:P (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    24 3j7o:P (3.4) BS02 rna N/A GO:0003735 ... N/A 24930395
    25 3j7o:Q (3.4) BS01 rna ? GO:0002181 ... Q95342 24930395
    26 3j7o:R (3.4) BS01 rna ? GO:0003723 ... F2Z546 24930395
    27 3j7o:S (3.4) BS01 rna ? GO:0003735 ... A0A4X1UAP0 24930395
    28 3j7o:S (3.4) BS02 rna ? GO:0003735 ... A0A4X1UAP0 24930395
    29 3j7o:T (3.4) BS01 rna ? GO:0003735 ... P49666 24930395
    30 3j7o:T (3.4) BS02 rna ? GO:0003735 ... P49666 24930395
    31 3j7o:U (3.4) BS01 rna ? GO:0002181 ... P67985 24930395
    32 3j7o:V (3.4) BS01 rna ? GO:0000122 ... P62831 24930395
    33 3j7o:W (3.4) BS01 rna N/A N/A N/A 24930395
    34 3j7o:X (3.4) BS01 rna ? GO:0003735 ... F2Z522 24930395
    35 3j7o:X (3.4) BS02 rna ? GO:0003735 ... F2Z522 24930395
    36 3j7o:Y (3.4) BS01 rna ? GO:0002181 ... I3L7Y1 24930395
    37 3j7o:Y (3.4) BS02 rna ? GO:0002181 ... I3L7Y1 24930395
    38 3j7o:Z (3.4) BS01 rna ? GO:0003735 ... A1XQU5 24930395
    39 3j7o:a (3.4) BS01 rna ? GO:0003735 ... F1RGC0 24930395
    40 3j7o:b (3.4) BS01 rna ? GO:0002181 ... Q95281 24930395
    41 3j7o:c (3.4) BS01 rna ? GO:0003723 ... F2Z554 24930395
    42 3j7o:d (3.4) BS01 rna ? GO:0002181 ... P62901 24930395
    43 3j7o:e (3.4) BS01 rna ? GO:0002181 ... Q6QAT0 24930395
    44 3j7o:f (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    45 3j7o:g (3.4) BS01 rna ? GO:0003735 ... Q29223 24930395
    46 3j7o:h (3.4) BS01 rna ? GO:0000463 ... Q29361 24930395
    47 3j7o:h (3.4) BS02 rna ? GO:0000463 ... Q29361 24930395
    48 3j7o:i (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    49 3j7o:j (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    50 3j7o:j (3.4) BS02 rna N/A GO:0003735 ... N/A 24930395
    51 3j7o:j (3.4) BS03 ZN N/A GO:0003735 ... N/A 24930395
    52 3j7o:k (3.4) BS01 rna ? GO:0003735 ... A0A4X1VLH7 24930395
    53 3j7o:l (3.4) BS01 rna ? GO:0002181 ... K7GP63 24930395
    54 3j7o:l (3.4) BS02 rna ? GO:0002181 ... K7GP63 24930395
    55 3j7o:m (3.4) BS01 rna ? GO:0003735 ... P63053 24930395
    56 3j7o:m (3.4) BS02 ZN ? GO:0003735 ... P63053 24930395
    57 3j7o:o (3.4) BS01 rna ? GO:0003674 ... P83884 24930395
    58 3j7o:o (3.4) BS02 ZN ? GO:0003674 ... P83884 24930395
    59 3j7o:p (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    60 3j7o:r (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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